PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689470.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 1164aa MW: 129401 Da PI: 6.7269

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689470.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.3	2.5e-22	139	240	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ XP_020689470.1 139 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDSIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDE 229 99***************************954.4444.49********************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+++++r+ XP_020689470.1 230 KQQLLLGIRRA 240 8889**997 PP
2	Auxin_resp	119.9	1.9e-39	265	348	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldp+rW+nS+Wr+L+ XP_020689470.1 265 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKAVYgHQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPLRWKNSQWRNLQ 348 79********************************9*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1164 aa Download sequence
MMKSPATAAA AAAATATAAA NPGGDGGERK TINPELWHAC AGPLVTLPPV GSLVAYFPQG 60 HSEQVAASMQ KDIDAHFPNY PNLPSKLICL LHNVTLHADT ETDEVYAQMT LQPVNSYDEK 120 TLLTTDLALK TSKPQTEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQELQ 180 ARDLHDSIWT FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG DSVLFIRDEK QQLLLGIRRA 240 NRQPTNISSS VLSSDSMHIG ILAAAAHAAA NSSPFTIFYN PRASPSEFVI PLAKYNKAVY 300 GHQLSLGMRF RMMFETEESG TRRYMGTITG ISDLDPLRWK NSQWRNLQVG WDESAPGERR 360 NRVSIWEIEP VAAPFFICPP PFFRTKRPRQ PGMPDDESSE METLFKRAMP WLGEEICIKD 420 AQSQNTVMPG LSLAQWMSMQ QNPLLGNSAI QSDYLRSLTN PIIQNLGAAD ISRQLGLQAQ 480 LLQQNNMQFN SPRLPQQAQQ VDTLPKIQSP LNQLSSVSQA QQPMQDISMQ QRQQFINQTV 540 SLSQTQTPQQ QQPSLLQNNL TQSQIMVQNQ IPQQQSLMQN QHVMQANLVN NHSQQHQQLL 600 LHQQQMQQQN QQQQQMQHQN QQQQQLQHQN QQQQQLIPQN RMPVQASNQT NQLHLSEHQL 660 QLQLLQKLQQ QQQQQLQQQS LLSQSLLQQS QLPQIQEQQI TLLEASQHPA YSNPSSQQPQ 720 SSPQQCGKVA SMNVRLPQSS QLLQQKLQQQ QTPLAELPMG VLPAPSTNVL STANLLAAGG 780 THTVLTDDAP SCSTSPSTNN SAILPQPVFN RISHHNMVAT EKVSPSPVTI LNPCSLEALA 840 ASTKLVKDIP KLEQNVKPSV PIPKLQGQGV APQVYLNNSA QMDYLDSSSS ATSACLSQND 900 GSLQQTLPLS SFNQPSLFRS TLTDSDVQGT DLRNNTLFGV NIDVPLGVPL TNDTLLANSL 960 DSGKYQNQLT GNPITNYTTS KDAQQELSSS MVSQSFGVPD MAFNSIDSSL TESSLLNRNS 1020 WGPTTQFQRM RTFTKVYKRG AVGRSLDITR YSGYDELKRD LARMFSIEGQ LEERQRIGWK 1080 LVYVDHENDV LLVGDDPWEE FVNCVRYIRI LSPQEVQQMS LDGDLGNGIL PHQACSSSDG 1140 GNAWRGQCDQ NSGNPSTGSY DHLE

Sequence ? help Back to Top

Protein Sequence Length: 1164 aa Download sequence

MMKSPATAAA AAAATATAAA NPGGDGGERK TINPELWHAC AGPLVTLPPV GSLVAYFPQG  60
HSEQVAASMQ KDIDAHFPNY PNLPSKLICL LHNVTLHADT ETDEVYAQMT LQPVNSYDEK  120
TLLTTDLALK TSKPQTEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQELQ  180
ARDLHDSIWT FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG DSVLFIRDEK QQLLLGIRRA  240
NRQPTNISSS VLSSDSMHIG ILAAAAHAAA NSSPFTIFYN PRASPSEFVI PLAKYNKAVY  300
GHQLSLGMRF RMMFETEESG TRRYMGTITG ISDLDPLRWK NSQWRNLQVG WDESAPGERR  360
NRVSIWEIEP VAAPFFICPP PFFRTKRPRQ PGMPDDESSE METLFKRAMP WLGEEICIKD  420
AQSQNTVMPG LSLAQWMSMQ QNPLLGNSAI QSDYLRSLTN PIIQNLGAAD ISRQLGLQAQ  480
LLQQNNMQFN SPRLPQQAQQ VDTLPKIQSP LNQLSSVSQA QQPMQDISMQ QRQQFINQTV  540
SLSQTQTPQQ QQPSLLQNNL TQSQIMVQNQ IPQQQSLMQN QHVMQANLVN NHSQQHQQLL  600
LHQQQMQQQN QQQQQMQHQN QQQQQLQHQN QQQQQLIPQN RMPVQASNQT NQLHLSEHQL  660
QLQLLQKLQQ QQQQQLQQQS LLSQSLLQQS QLPQIQEQQI TLLEASQHPA YSNPSSQQPQ  720
SSPQQCGKVA SMNVRLPQSS QLLQQKLQQQ QTPLAELPMG VLPAPSTNVL STANLLAAGG  780
THTVLTDDAP SCSTSPSTNN SAILPQPVFN RISHHNMVAT EKVSPSPVTI LNPCSLEALA  840
ASTKLVKDIP KLEQNVKPSV PIPKLQGQGV APQVYLNNSA QMDYLDSSSS ATSACLSQND  900
GSLQQTLPLS SFNQPSLFRS TLTDSDVQGT DLRNNTLFGV NIDVPLGVPL TNDTLLANSL  960
DSGKYQNQLT GNPITNYTTS KDAQQELSSS MVSQSFGVPD MAFNSIDSSL TESSLLNRNS  1020
WGPTTQFQRM RTFTKVYKRG AVGRSLDITR YSGYDELKRD LARMFSIEGQ LEERQRIGWK  1080
LVYVDHENDV LLVGDDPWEE FVNCVRYIRI LSPQEVQQMS LDGDLGNGIL PHQACSSSDG  1140
GNAWRGQCDQ NSGNPSTGSY DHLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein