PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020688550.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HRT-like

Protein Properties

Length: 438aa MW: 49182.4 Da PI: 9.6586

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020688550.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	51.6	1.5e-16	264	294	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+++ Gs+C++qP++gRKRC+eHKG++i XP_020688550.1 264 ICGVAIGRGSICTNQPIPGRKRCAEHKGKKI 294 8***************************997 PP
2	HRT-like	53	5.9e-17	358	388	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv dGsvCkr+Pv gRKRCe+HKGmR+ XP_020688550.1 358 VCGVVYCDGSVCKRKPVLGRKRCEQHKGMRV 388 7*****************************7 PP
3	HRT-like	50.7	2.9e-16	407	436	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGvi ++G C+r Pv gRKRCeeHKG+R XP_020688550.1 407 ICGVINGNGHACTRLPVSGRKRCEEHKGRR 436 8****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MQCRLKREDC KHTKHDLLFS KWEILIGPND WEGHASGKEG VERYRIHNLP TASSCPGLYE 60 LGVASIPTNE GHRLRKHDWE NVIVGYLGQA DNVRTRLQEY GRSGSHLDHG NLITSCKNYE 120 SSTTQEGIGL FKDIFSKGYS IMFRWAPIKS KREAEKTEIE ILRVFDYAWN RKGNGLCRHA 180 DLVARLIHDS ASPVQSPMRR LMQWKQEAFS KRVGINIDEK LPLYEELAPL RGLKGYLLPR 240 IVKFSSSQLQ FLPQDVNSLN GQIICGVAIG RGSICTNQPI PGRKRCAEHK GKKITGSGSA 300 SGRMTSSNEI LLENGTKGCD LNQRVTLPLL GEICSPFLQH QSPLAQEKFH YDKEETGVCG 360 VVYCDGSVCK RKPVLGRKRC EQHKGMRVHA AMPSADKVFN SKQLNNICGV INGNGHACTR 420 LPVSGRKRCE EHKGRRLV

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MQCRLKREDC KHTKHDLLFS KWEILIGPND WEGHASGKEG VERYRIHNLP TASSCPGLYE  60
LGVASIPTNE GHRLRKHDWE NVIVGYLGQA DNVRTRLQEY GRSGSHLDHG NLITSCKNYE  120
SSTTQEGIGL FKDIFSKGYS IMFRWAPIKS KREAEKTEIE ILRVFDYAWN RKGNGLCRHA  180
DLVARLIHDS ASPVQSPMRR LMQWKQEAFS KRVGINIDEK LPLYEELAPL RGLKGYLLPR  240
IVKFSSSQLQ FLPQDVNSLN GQIICGVAIG RGSICTNQPI PGRKRCAEHK GKKITGSGSA  300
SGRMTSSNEI LLENGTKGCD LNQRVTLPLL GEICSPFLQH QSPLAQEKFH YDKEETGVCG  360
VVYCDGSVCK RKPVLGRKRC EQHKGMRVHA AMPSADKVFN SKQLNNICGV INGNGHACTR  420
LPVSGRKRCE EHKGRRLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	4e-88	HRT-like family protein