PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020688226.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family TCP
Protein Properties Length: 278aa    MW: 29781.7 Da    PI: 10.5625
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020688226.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.52.4e-3884167287
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 
                      +kk++ +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as+++++sss s+s  ss
  XP_020688226.2  84 SAKKQPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTIPASFSTSSSSSISTS--SS 167
                     579******************************************************************9995444444444..22 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MAWRRAPLPP CGFPSVSTNY CRSIIILWHR LTSSNLNSNA TPSLSLPSLL RMANPDPVGA  60
ATTAPHLLSQ TSSPNNQNQL SLPSAKKQPA KDRHSKVDGR GRRIRMPIIC AARVFQLTRE  120
LGHKSDGQTI EWLLRQAEPS IIAATGSGTI PASFSTSSSS SISTSSSPST FILGKRLRAD  180
EDVPTKEESV GIGPTGGFWA VPARADFGGQ FWSFAAPEMV LPTAMGRYVS QPMEELSVAR  240
VGNYVPLAQG HHLNLLASFS GAPPSSAAAN GRREEEPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.17e-54TCP family protein