PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020687888.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 221aa MW: 24557.4 Da PI: 10.5014 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 107 | 151 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky XP_020687888.1 107 SWTEEEHRAFLAGLHKLGKGDWRGISRNFVTTRTPTQVASHAQKY 151 5*******************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence |
MVRKCSHCGN NGHNSRTCSS SSSKYGGGLR LFGVQLQIAS SSSSSSSHLK RSFSLDCLST 60 TCYNSSHSPS SSSSSTSLVC IDEAAQKVST GYLSDCLRTQ ERKKGISWTE EEHRAFLAGL 120 HKLGKGDWRG ISRNFVTTRT PTQVASHAQK YFLRKNNLNN KKRRSSLFDV VGSCERQANV 180 RKFFNSKDHS LLKDANENSL TLNNQQCNLK PSQFSRIRGY I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56840.1 | 1e-42 | MYB_related family protein |