PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020686094.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 283aa MW: 30635.2 Da PI: 7.0142

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020686094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.5e-05	100	119	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C C+k+F+r n++ H+ XP_020686094.1 100 FSCAVCNKTFNRFNNMQMHM 119 89*****************9 PP
2	zf-C2H2	14.6	9.9e-05	188	210	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C CgksF + + ++H +++ XP_020686094.1 188 FACRRCGKSFAVRGDWRTHEKNC 210 78*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MNPLQASMEE DDSILLLTLW PPGQQKPSPA SSTSSSQWLR SGSLLQDKDD GGVTVALSIG 60 LPSSVGGGAA AVNGSSGGGN PPSQYWIPSA AEILVGATQF SCAVCNKTFN RFNNMQMHMW 120 GHGSQYRKGS DSLRGATAKV TPASMMRLPC YCCAEGCKNN IDHPRSRPLK DFRTLQTHYK 180 RKHGARPFAC RRCGKSFAVR GDWRTHEKNC GKLWFCICGS DFKHKRSLKD HVRSFGGGHA 240 PHIVESLGVG EEGEEEEEDD DGEEGEEEGK GDGGDMGIEG DKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-106	C2H2 family protein