PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020685584.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Trihelix
Protein Properties Length: 293aa    MW: 33065 Da    PI: 9.7874
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020685584.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.66.5e-1323107186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++   aL+ea  ++  +l+rg+l++++W++v++ +     + g  ++++ qCk++++ l+k+yk +k   ++      st+p+f++l+
  XP_020685584.1  23 CWSEDASEALVEAWGDRFLHLSRGNLRQKDWKDVADTVnarqDAVGNpRKTSGQCKNRIDTLKKKYKLEKSKPGR------STWPFFSRLD 107
                     7*************************************998855555266******************9999997......58*****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MNFRHRAAAA STASSGSGVR EDCWSEDASE ALVEAWGDRF LHLSRGNLRQ KDWKDVADTV  60
NARQDAVGNP RKTSGQCKNR IDTLKKKYKL EKSKPGRSTW PFFSRLDFLI GPSPEKPSLS  120
IKVKQRNPNS SSATPPPPSL VLSSWGSSRV RTNLPDATQS SREVSGVGYG DFDGGEDMDR  180
IDEEGKVPLF ESLAIKKRRT SWRRSDVFSA GDDGGGGGDH GDFRELVRAI EKIGEIYERV  240
ERSKLQQTIE LEKQRMEFEK DIEIQRMKVF METQLELHRM KRHKDNSDSG KMS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.14e-31Trihelix family protein