PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020685553.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 504aa MW: 54292.4 Da PI: 5.6883

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020685553.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.3e-11	327	372	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + ++Y+k Lq XP_020685553.1 327 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 372 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MPERDAMESF LSTFLSSSWS DVNESANRSW GGTIASQTEN LLADSMESFQ ADGKKSAMPI 60 IPSGHIIAAE DLSIAHENTS SFFSDGSVKF GIGKGLYLGE NLSQSQQASH NSQPSHCIEA 120 SEGRFSIPDT VTCNSTGITY GLELNSSLPH SALTISSSLE NSGSEPPTFG RSIGEAHSIS 180 SVPTIWPSYS GISSLSGQQK VENFSFQGIT NGVDLLRNSQ NELCSNLVTF ASGQHMKMTR 240 ANSPPHNLGT TEATSLQLPS FSGGSQMSFS KTTGMHTNPQ PEGTTLQHQL GHSSNSHQHM 300 TQSNAVCCNV TAKPRVRARR GQATDPHSIA ERLRREKIAE RMKNLQELVP NSNKTDKASM 360 LDEIIDYVKF LQLQVKVLSM SRLGAAGAVV PLITDVQAEE TGSLHLSTIN QGVDILESQD 420 NLAFEQEVVK LMESSVTTAM QYLQNKGLCL MPIALATAIS NQKGSIASTP SDRREPDDHE 480 NEANCFPGVI AKQEEVTKPM GNGR

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MPERDAMESF LSTFLSSSWS DVNESANRSW GGTIASQTEN LLADSMESFQ ADGKKSAMPI  60
IPSGHIIAAE DLSIAHENTS SFFSDGSVKF GIGKGLYLGE NLSQSQQASH NSQPSHCIEA  120
SEGRFSIPDT VTCNSTGITY GLELNSSLPH SALTISSSLE NSGSEPPTFG RSIGEAHSIS  180
SVPTIWPSYS GISSLSGQQK VENFSFQGIT NGVDLLRNSQ NELCSNLVTF ASGQHMKMTR  240
ANSPPHNLGT TEATSLQLPS FSGGSQMSFS KTTGMHTNPQ PEGTTLQHQL GHSSNSHQHM  300
TQSNAVCCNV TAKPRVRARR GQATDPHSIA ERLRREKIAE RMKNLQELVP NSNKTDKASM  360
LDEIIDYVKF LQLQVKVLSM SRLGAAGAVV PLITDVQAEE TGSLHLSTIN QGVDILESQD  420
NLAFEQEVVK LMESSVTTAM QYLQNKGLCL MPIALATAIS NQKGSIASTP SDRREPDDHE  480
NEANCFPGVI AKQEEVTKPM GNGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	5e-63	bHLH family protein