PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682913.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 304aa MW: 33550.4 Da PI: 8.1977

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682913.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.4	3.2e-07	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H XP_020682913.1 137 HYCHVCGKGFRRDANLRMHMRAH 159 68*******************99 PP
2	zf-C2H2	13.2	0.00026	229	252	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ Cg k Fs s+L++H + + XP_020682913.1 229 YVCSRCGnKEFSVLSDLRTHEKHC 252 9*******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MTISLPIDAI MDDVLFCSSD MPVFDLLSHF QSLHFDLSIL RDKIHQVQCL ITPLVSGDQA 60 DVNAVIAPRA NVLIHDMIVT ASSILLSLQQ LACCSPAPPA PQPHEKHHTA RAAAAKQQPS 120 HDVVEMDAGA LLAKYTHYCH VCGKGFRRDA NLRMHMRAHG DAYKTREALA KGGGGILHQG 180 EESGSTNRNK YSCPQEGCRW NWKHAKFQPL KSVACAKNHY KRSHCPKLYV CSRCGNKEFS 240 VLSDLRTHEK HCGNPRWRCS CGTTFSRKDK LLGHVALFVG HVPAPEGVAF DVGDQEGLEW 300 IAGT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-84	C2H2 family protein