PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682694.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 824aa MW: 91420.2 Da PI: 8.5142

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.1	3.7e-19	324	423	1	98
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k l+ sd+++ grlvlpkk+ae++ + ++e+ l+++d sg++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e XP_020682694.1 324 FEKMLSASDAGRIGRLVLPKKCAEAYfpliS--QPEGLPLKMQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PE 414 89************************654..445667***********99899999999.*******************987.77 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++lv+++++ XP_020682694.1 415 GKLVMGFRK 423 777777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 824 aa Download sequence
MEAAVRRLFR TLSSFDHGNF CETFHSNAAG WRKCESCGKR IHCGCIVSIP VYMLLDVGGV 60 ECMACVRNSF SAVSNQISSP PVALSTKLPE RSKAFPVKSW NQVSGSFPGQ WRHPTNIWNS 120 SSIQSDLHQR LSYEFDRPNA ERLMAGARSS FSSQEKKSED IHEKIASSGP NHVAQDMNGE 180 NNLITMRKVM ASDPSTSCFS GIKFEAHQIS HGSSSVNSKG DSRSLLMGLS APFSPINGTN 240 DPSQVSTTQP QRQVASSTLS KQCYPNSLSS IDSTSESPAH MRNGKGRFDP GARSHLLPRY 300 WPRITDQELQ QISGDSNSAI TPLFEKMLSA SDAGRIGRLV LPKKCAEAYF PLISQPEGLP 360 LKMQDASGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR IDPEGKLVMG 420 FRKAANVSNN EQDIQSAKDG NGGSTPSDVK PNTVDYIAIP PLLPHKGNKE SRNQTNAADK 480 ASWSKNDKSE FILKDVCAPK FDIALCRRKG SFLISKSKRL RIESAESIEL KLTWEEAQVL 540 LRPALNFASN VVIVEGHDFE EYKEAPVLGL PMYFAKNHEG SINNRWAQCE DCLKWRRLPL 600 DSHPNYRWTC SDNKWDPKRS SCSAVQESSA EITHLLPSRA GSCKRSNVIF ENENENVNEN 660 AEVIDGLDTL ANLAILGEGK SQPSSSQPTT KHPRHRPGCT CIVCIQPPSG KGPKHKQTCD 720 CNVCLTVKRR FRTLMLRREK RQSEKEAVIS WPPPYPLLQN SGANSSPQMP IENNVVVNAE 780 SERKRTAPSP IKTQIDLNLQ PEREEEPSPV ANSVNSMNLL TPNI

Sequence ? help Back to Top

Protein Sequence Length: 824 aa Download sequence

MEAAVRRLFR TLSSFDHGNF CETFHSNAAG WRKCESCGKR IHCGCIVSIP VYMLLDVGGV  60
ECMACVRNSF SAVSNQISSP PVALSTKLPE RSKAFPVKSW NQVSGSFPGQ WRHPTNIWNS  120
SSIQSDLHQR LSYEFDRPNA ERLMAGARSS FSSQEKKSED IHEKIASSGP NHVAQDMNGE  180
NNLITMRKVM ASDPSTSCFS GIKFEAHQIS HGSSSVNSKG DSRSLLMGLS APFSPINGTN  240
DPSQVSTTQP QRQVASSTLS KQCYPNSLSS IDSTSESPAH MRNGKGRFDP GARSHLLPRY  300
WPRITDQELQ QISGDSNSAI TPLFEKMLSA SDAGRIGRLV LPKKCAEAYF PLISQPEGLP  360
LKMQDASGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR IDPEGKLVMG  420
FRKAANVSNN EQDIQSAKDG NGGSTPSDVK PNTVDYIAIP PLLPHKGNKE SRNQTNAADK  480
ASWSKNDKSE FILKDVCAPK FDIALCRRKG SFLISKSKRL RIESAESIEL KLTWEEAQVL  540
LRPALNFASN VVIVEGHDFE EYKEAPVLGL PMYFAKNHEG SINNRWAQCE DCLKWRRLPL  600
DSHPNYRWTC SDNKWDPKRS SCSAVQESSA EITHLLPSRA GSCKRSNVIF ENENENVNEN  660
AEVIDGLDTL ANLAILGEGK SQPSSSQPTT KHPRHRPGCT CIVCIQPPSG KGPKHKQTCD  720
CNVCLTVKRR FRTLMLRREK RQSEKEAVIS WPPPYPLLQN SGANSSPQMP IENNVVVNAE  780
SERKRTAPSP IKTQIDLNLQ PEREEEPSPV ANSVNSMNLL TPNI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	728	741	KRRFRTLMLRREKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-141	B3 family protein