PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682692.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 838aa MW: 93097 Da PI: 8.6504

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682692.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.1	3.8e-19	338	437	1	98
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k l+ sd+++ grlvlpkk+ae++ + ++e+ l+++d sg++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e XP_020682692.1 338 FEKMLSASDAGRIGRLVLPKKCAEAYfpliS--QPEGLPLKMQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PE 428 89************************654..445667***********99899999999.*******************987.77 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++lv+++++ XP_020682692.1 429 GKLVMGFRK 437 777777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence
MSSSSAMATS GRKICFNTQC KKVITEQTRR KGWKLRSGDY SELCERCFSS FDHGNFCETF 60 HSNAAGWRKC ESCGKRIHCG CIVSIPVYML LDVGGVECMA CVRNSFSAVS NQISSPPVAL 120 STKLPERSKA FPVKSWNQVS GSFPGQWRHP TNIWNSSSIQ SDLHQRLSYE FDRPNAERLM 180 AGARSSFSSQ EKKSEDIHEK IASSGPNHVA QDMNGIKFEA HQISHGSSSV NSKGDSRSLL 240 MGLSAPFSPI NGTNDPSQVS TTQPQRQVAS STLSKQCYPN SLSSIDSTSE SPAHMRNGKG 300 RFDPGARSHL LPRYWPRITD QELQQISGDS NSAITPLFEK MLSASDAGRI GRLVLPKKCA 360 EAYFPLISQP EGLPLKMQDA SGKEWVFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV 420 TFSRIDPEGK LVMGFRKAAN VSNNEQDIQS AKDGNGGSTP SDVKPNTVDY IAIPPLLPHK 480 GNKESRNQTN AADKASWSKN DKSEFILKDV CAPKFDIALC RRKGSFLISK SKRLRIESAE 540 SIELKLTWEE AQVLLRPALN FASNVVIVEG HDFEEYKEAP VLGLPMYFAK NHEGSINNRW 600 AQCEDCLKWR RLPLDSHPNY RWTCSDNKWD PKRSSCSAVQ ESSAEITHLL PSRAGSCKRS 660 NVIFENENEN VNENAEVIDG LDTLANLAIL GEGKSQPSSS QPTTKHPRHR PGCTCIVCIQ 720 PPSGKGPKHK QTCDCNVCLT VKRRFRTLML RREKRQSEKE AVISWPPPYP LLQNSGANSS 780 PQMPIENNVV VNAESERKRT APSPIKTQID LNLQPEREEE PSPVANSVNS MNLLTPNI

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence

MSSSSAMATS GRKICFNTQC KKVITEQTRR KGWKLRSGDY SELCERCFSS FDHGNFCETF  60
HSNAAGWRKC ESCGKRIHCG CIVSIPVYML LDVGGVECMA CVRNSFSAVS NQISSPPVAL  120
STKLPERSKA FPVKSWNQVS GSFPGQWRHP TNIWNSSSIQ SDLHQRLSYE FDRPNAERLM  180
AGARSSFSSQ EKKSEDIHEK IASSGPNHVA QDMNGIKFEA HQISHGSSSV NSKGDSRSLL  240
MGLSAPFSPI NGTNDPSQVS TTQPQRQVAS STLSKQCYPN SLSSIDSTSE SPAHMRNGKG  300
RFDPGARSHL LPRYWPRITD QELQQISGDS NSAITPLFEK MLSASDAGRI GRLVLPKKCA  360
EAYFPLISQP EGLPLKMQDA SGKEWVFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV  420
TFSRIDPEGK LVMGFRKAAN VSNNEQDIQS AKDGNGGSTP SDVKPNTVDY IAIPPLLPHK  480
GNKESRNQTN AADKASWSKN DKSEFILKDV CAPKFDIALC RRKGSFLISK SKRLRIESAE  540
SIELKLTWEE AQVLLRPALN FASNVVIVEG HDFEEYKEAP VLGLPMYFAK NHEGSINNRW  600
AQCEDCLKWR RLPLDSHPNY RWTCSDNKWD PKRSSCSAVQ ESSAEITHLL PSRAGSCKRS  660
NVIFENENEN VNENAEVIDG LDTLANLAIL GEGKSQPSSS QPTTKHPRHR PGCTCIVCIQ  720
PPSGKGPKHK QTCDCNVCLT VKRRFRTLML RREKRQSEKE AVISWPPPYP LLQNSGANSS  780
PQMPIENNVV VNAESERKRT APSPIKTQID LNLQPEREEE PSPVANSVNS MNLLTPNI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	742	755	KRRFRTLMLRREKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-167	B3 family protein