PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020682608.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 232aa    MW: 26638.8 Da    PI: 10.5248
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020682608.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-16135226194
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     f+++++ps  +k+  l++p  fa ++  + ++++ l  ++ + r+W v +    +++++ +++GWkeF++ n+L++gD+++F++ +  ++  + v
  XP_020682608.2 135 FVSIMVPSCISKRFYLTIPIAFAIQYL-PRASGRVLLQRNDKERTWPVHC--LVQGNSVGFSSGWKEFAQYNQLNVGDVCIFEMLEAqKGVLMAV 226
                     88999******************9993.444555555567888*******..77777788***********************776635444444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MEELCAIAYG KKDRHPCHES SPRTSEQPKQ LAMFKRFESK QKDTKRSISK RRMNTTSTKR  60
ILRQKNFTGT RGKKSLNEQE SEIKEGTMNL SNEVSLAKQW NPKDFIISKK ARLTDAEKSI  120
VLHLAETIQT DRPTFVSIMV PSCISKRFYL TIPIAFAIQY LPRASGRVLL QRNDKERTWP  180
VHCLVQGNSV GFSSGWKEFA QYNQLNVGDV CIFEMLEAQK GVLMAVHISR IK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-20B3 family protein