PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020682555.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 173aa    MW: 19960.2 Da    PI: 6.7876
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020682555.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.62.3e-2461150290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     ++++YA++ GFsvrk++++   ++++i++++fvCsk g++++++++  +++r tr++ rtgC a+++   ++dg w+v+++ + HnHela
  XP_020682555.2  61 CFCTYAHDNGFSVRKDHHSFWPNSRKIKSKDFVCSKAGFKKSDDHNsGKRKRFTRPVVRTGCPAMVRFVTDEDGYWHVKRFIESHNHELA 150
                     799**************************************999984566677***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MDFSAKREVE EGMEEGVHES ERMYESEGLV YELGSEPNLA ENSSGLNISA VYKDETEAYE  60
CFCTYAHDNG FSVRKDHHSF WPNSRKIKSK DFVCSKAGFK KSDDHNSGKR KRFTRPVVRT  120
GCPAMVRFVT DEDGYWHVKR FIESHNHELA SPADRHLLRS CRNIRIMENS STV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-12FAR1 family protein