PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682547.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CAMTA

Protein Properties

Length: 1030aa MW: 116556 Da PI: 6.4411

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682547.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.2	1.2e-56	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL n++k++++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+v+vl+cyYah+e+n++fqr XP_020682547.1 20 REaQHRWLRPAEICEILRNYHKFRIAPEPQNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNENFQR 114 4449***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Leeel +ivlvhy+evk XP_020682547.1 115 RSYWMLEEELMHIVLVHYREVK 136 *****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1030 aa Download sequence
MADGRRLGLT PQLDIEQILR EAQHRWLRPA EICEILRNYH KFRIAPEPQN KPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSYWML 120 EEELMHIVLV HYREVKGGKS SYLQQREDGE SVRNSNPGSP ACSNSSVNLS QVPSQVSDYG 180 SPISTQHSEY EDADSADNYQ SSSRYHSIPE MQQYGSWMNV QLANTCAPAP TRLDHCDYPG 240 VQAAIPDFKS FTDARDSMTK VENPSDAGFT YSGLSKKTDT ASWHEIMESC STEFQTPFDL 300 SISSKWATTS EDNPERNSFM NQDFLTGDIS THKEDGTTLL SNIVWQFSDN EAGSLVASST 360 TVENSHATEE SFNQPSDLSN KKSEGLTKND SFSRWMSKEL GEVDNSQINL NSGLFWSSLE 420 SESVVADSNL LNQEQLDAYL MGPSLSQDQL FSIIDFSPNW AYADLVTKVI VKGRFLVNEE 480 DLQKYKWSCM FGEIEVPANI LANGTLCCHA PPHKSGRVPF YITCSNRVAC SEIREFEYKL 540 NLPQIVGTND LSNSTLLSRF EKLLLLDSVD YLIPDCGHLN ERSHADCTIC SLIMKVDDEV 600 IDLFKHNPDE DLLRIATKNR ALESQMKRKL HLWLLHKVGE GDGKGPNVLD KEGQGVLHLA 660 AALGYDWAIK PTVAAGVNIN FRDVHGWTAM HWAAFCGRER TIVTLIALDA SPGALTDPTP 720 EFPTGRTPAD LASQNGHKGI AGFLAESSLT NHLRALNLKN SENQNLSKPY GLLGFENVSD 780 KINAHYLEGE IQTSLSAVRN ATEAAARIFQ VFRVQSFNRK RIVEHSDEKY EMSDERALSL 840 ISLKPYKSGQ HDTPVHAAAI KIQNKFRGWK GRKEFLITRQ RIVKIQAHVR GHQVRKHYRK 900 IIWSVGIVEK VILRWRRKGS GLRGFRSEEL IEGQKNERVL NKEDDYDFLQ VGRKQTEARM 960 EKALARVKSM VQYPEARDQY RRLVTVVTEL QESKLMQADS QNEISGPSDA DFMMELEGLI 1020 GDYDIMPNQS

Sequence ? help Back to Top

Protein Sequence Length: 1030 aa Download sequence

MADGRRLGLT PQLDIEQILR EAQHRWLRPA EICEILRNYH KFRIAPEPQN KPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSYWML  120
EEELMHIVLV HYREVKGGKS SYLQQREDGE SVRNSNPGSP ACSNSSVNLS QVPSQVSDYG  180
SPISTQHSEY EDADSADNYQ SSSRYHSIPE MQQYGSWMNV QLANTCAPAP TRLDHCDYPG  240
VQAAIPDFKS FTDARDSMTK VENPSDAGFT YSGLSKKTDT ASWHEIMESC STEFQTPFDL  300
SISSKWATTS EDNPERNSFM NQDFLTGDIS THKEDGTTLL SNIVWQFSDN EAGSLVASST  360
TVENSHATEE SFNQPSDLSN KKSEGLTKND SFSRWMSKEL GEVDNSQINL NSGLFWSSLE  420
SESVVADSNL LNQEQLDAYL MGPSLSQDQL FSIIDFSPNW AYADLVTKVI VKGRFLVNEE  480
DLQKYKWSCM FGEIEVPANI LANGTLCCHA PPHKSGRVPF YITCSNRVAC SEIREFEYKL  540
NLPQIVGTND LSNSTLLSRF EKLLLLDSVD YLIPDCGHLN ERSHADCTIC SLIMKVDDEV  600
IDLFKHNPDE DLLRIATKNR ALESQMKRKL HLWLLHKVGE GDGKGPNVLD KEGQGVLHLA  660
AALGYDWAIK PTVAAGVNIN FRDVHGWTAM HWAAFCGRER TIVTLIALDA SPGALTDPTP  720
EFPTGRTPAD LASQNGHKGI AGFLAESSLT NHLRALNLKN SENQNLSKPY GLLGFENVSD  780
KINAHYLEGE IQTSLSAVRN ATEAAARIFQ VFRVQSFNRK RIVEHSDEKY EMSDERALSL  840
ISLKPYKSGQ HDTPVHAAAI KIQNKFRGWK GRKEFLITRQ RIVKIQAHVR GHQVRKHYRK  900
IIWSVGIVEK VILRWRRKGS GLRGFRSEEL IEGQKNERVL NKEDDYDFLQ VGRKQTEARM  960
EKALARVKSM VQYPEARDQY RRLVTVVTEL QESKLMQADS QNEISGPSDA DFMMELEGLI  1020
GDYDIMPNQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein