PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020682384.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARR-B
Protein Properties Length: 578aa    MW: 65592.8 Da    PI: 6.4357
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020682384.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.72.3e-27336390156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++WtpeLH+rFv+a+eqL G+++A+P++ilelmkv+gLt+++v+SHLQk+R++
  XP_020682384.1 336 KMKVDWTPELHRRFVKAIEQL-GIDQAIPSKILELMKVEGLTRHNVASHLQKFRMH 390
                     5689*****************.********************************96 PP
2Myb_DNA-binding41.53e-13339388248
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                        WT+e++ ++v+a++qlG +   +++I + m  +g+t+ ++ s++qk++
   XP_020682384.1 339 VDWTPELHRRFVKAIEQLGIDqaIPSKILELMKvEGLTRHNVASHLQKFR 388
                      57**********************************************97 PP
3Response_reg22.84.5e-09201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l++d ++  +   +  le  +y  v +  + e+a+e +  k++++++ ++      ++G++ +k ++  + ++p iv++     +++ +++ +G
  XP_020682384.1  20 ILLCDQDRESAADTKMKLEAMDY-TVYSYCKEEDAMEAVlrKAENYHIAIVE--VAAINGHASFKFLEMVK-DIPTIVISEVHCLNTVMKCIALG 110
                     788888999999999999999**.8888888888888884555558888876..67899*99999998888.9*******9999*********** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl Kp ++e+l++
  XP_020682384.1 111 AAEFLQKPLSEEKLRN 126
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    
MPCSADDLAL WKDFPKGLGI LLCDQDRESA ADTKMKLEAM DYTVYSYCKE EDAMEAVLRK  60
AENYHIAIVE VAAINGHASF KFLEMVKDIP TIVISEVHCL NTVMKCIALG AAEFLQKPLS  120
EEKLRNIWQH VVHKAFNAGG NAISTSLKPI KDAVATVLQI QSNSNELKIE IPSQLFDMEQ  180
EHEVIYVKEK ENDKFSAPST PQQIKGERLN EAETFLDQPD CSEKDCAIED KELSETPKCI  240
LSETKFVDNA CNNITVVGNS DEIVPCKQGT ATAEEELNSA EGSKADECNS AKEISLQFLF  300
TENVENDDSD SEKQTKKKSF VQSNSCLNRI RGSRRKMKVD WTPELHRRFV KAIEQLGIDQ  360
AIPSKILELM KVEGLTRHNV ASHLQKFRMH KRHILPKEDD RRWQVHTDPT QRGYMQKPIM  420
AFPPYHSNYI IPPSQPYPIW PHQAYHVPNV QMWRHSGLPT WHPPPENWQT KIYPEIHADA  480
WGCPVLPHYS YGYGQFYMPP QGPAISNSGQ DASGDRILKS SYDHCPAEEV IDKVVKEAMK  540
KPWLPLPLGL KPPSTEKILA ELHNKGIHTI PPLPRRRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.31e-117ARR-B family protein