PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681486.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 1470aa MW: 165046 Da PI: 7.0181

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681486.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	1437	1463	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg+sF+ s++ rH r+ H XP_020681486.1 1437 YKCKvaGCGMSFRFVSDFSRHRRKtgH 1463 9**********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1470 aa Download sequence
MTEADIPVWL KNLPLAPEYR PTETEFADPI AFISRIEREA ASFGICKVIP PVPKPSKKFV 60 LSNLNRSLSK SPELGDAAAA SAGPSSEAAV FTTRQQELGS RRGRPALPKQ VWQSGDVYTL 120 EQFEGKSKAF ARSQLGGFKE VTPLLVESLF WKAVTDKPIN IEYANDVPGS GFAVPEEPFR 180 YISWRRNRKR GLHRGKVNEE KCGFRLMSSG DNGQPQKSLG SGSDVEGMKG TSGWKLSNSR 240 WNLQVIARSP GSLTRFMPDD VPGVTSPMVY IGMLFSWFAW HVEDHELHSM NYLHMGSPKT 300 WYAVPQDHAV TLEEMVRFHG YGESVDRLAA FIMLGEKTTL LSPEVLVASG VPCCRLVQHP 360 GEFVVTFPRA YHVGFSHGFN CGEAANFATP EWLKVAKEAA IRRAAMNHLP MLSHQQLLYI 420 LTMSFVSRIP RTLISGVRSS RLRDRKKEER EILVKKAFLT DMMNENYLLC VLLEKESTSP 480 ILWEPYMLPA PCVVSQSYPS ISLKSQYFGD QNGCCTHNQQ MEINTQGESL DKVDDCHVEK 540 PIDEAIALRN TCSVIPLTEQ SYKNPIHADL ATSDLEAFED EDDLPVGLNV DSGSLACVAC 600 GNLGYPFMAV IQPSVEAAKM IFSIICEESH EKSDKSQCFI SSPCLQNDAC NSTAERCPEV 660 AEQANLHASC QLCPKSSITS QHSREHDMLK PIGSGSFLNY FPMNSLENKG EKLDATECQT 720 KSNKCVSDSS ANAFCSHGIR SCESVKKMEG IWRLKTSKTV ENGPGSDSWP FSEDESVKEK 780 VSVPKWDVSN ILLRPRVFCL QHAIEVEELL HNRGGVHIRV ICHSDYLKFK AYAASIAEEM 840 RTELQLKDVP LENASQEDLN LINISIDDEE HQEDGKDWTS KLGVNLRYYV KFRKHSASTQ 900 EQLPSALSGM FSSSSTVSIL SSLRWLRRKS RTPAKPQCII AEKPHISATA TGGVQTLKVI 960 DGDNIKAIQV YQSRKKKTSD LAFKDHKHPV KELGSCNQNV AVIGKSEYVA APVIDNVENL 1020 FTVPISMMEN PEISQNSIAK SSSPSVGFQC FSGLNGLNNT TIVSVPVIFQ YNQLYYNTPT 1080 SNSSVLYNEE KNGGETSLDS DGGRSKKLEL QDEMAIPELK SSEDKQLIVT GSEANFHDSG 1140 NLSSEHLLLS SDEEAQHMQE KTQTTEEQNA EGSPRFSLLA ENHSYVPQLL TVESEMHIEA 1200 SMAEELRSSN CSVHCEEELC SVIENEDEMQ KIEASTGNNN CSPDVFVARD ERRASTLNIK 1260 SYVRRKNKRK WDAERQGAEE HMETENTQKK LEIQDKEAAQ QTCNGFIRSP CEGLRPRNGK 1320 LQSYVTEVKV ADRRRGSNSM GRRKRAAAET SDTFECDIEG CRMRFRTKAE IQLHKRNRCT 1380 YDECRKRFSN HKYAMRHQRV HNDERPFKCS WKGCKMSFKW EWARTEHLRL HTGERPYKCK 1440 VAGCGMSFRF VSDFSRHRRK TGHFVSTNRP

Sequence ? help Back to Top

Protein Sequence Length: 1470 aa Download sequence

MTEADIPVWL KNLPLAPEYR PTETEFADPI AFISRIEREA ASFGICKVIP PVPKPSKKFV  60
LSNLNRSLSK SPELGDAAAA SAGPSSEAAV FTTRQQELGS RRGRPALPKQ VWQSGDVYTL  120
EQFEGKSKAF ARSQLGGFKE VTPLLVESLF WKAVTDKPIN IEYANDVPGS GFAVPEEPFR  180
YISWRRNRKR GLHRGKVNEE KCGFRLMSSG DNGQPQKSLG SGSDVEGMKG TSGWKLSNSR  240
WNLQVIARSP GSLTRFMPDD VPGVTSPMVY IGMLFSWFAW HVEDHELHSM NYLHMGSPKT  300
WYAVPQDHAV TLEEMVRFHG YGESVDRLAA FIMLGEKTTL LSPEVLVASG VPCCRLVQHP  360
GEFVVTFPRA YHVGFSHGFN CGEAANFATP EWLKVAKEAA IRRAAMNHLP MLSHQQLLYI  420
LTMSFVSRIP RTLISGVRSS RLRDRKKEER EILVKKAFLT DMMNENYLLC VLLEKESTSP  480
ILWEPYMLPA PCVVSQSYPS ISLKSQYFGD QNGCCTHNQQ MEINTQGESL DKVDDCHVEK  540
PIDEAIALRN TCSVIPLTEQ SYKNPIHADL ATSDLEAFED EDDLPVGLNV DSGSLACVAC  600
GNLGYPFMAV IQPSVEAAKM IFSIICEESH EKSDKSQCFI SSPCLQNDAC NSTAERCPEV  660
AEQANLHASC QLCPKSSITS QHSREHDMLK PIGSGSFLNY FPMNSLENKG EKLDATECQT  720
KSNKCVSDSS ANAFCSHGIR SCESVKKMEG IWRLKTSKTV ENGPGSDSWP FSEDESVKEK  780
VSVPKWDVSN ILLRPRVFCL QHAIEVEELL HNRGGVHIRV ICHSDYLKFK AYAASIAEEM  840
RTELQLKDVP LENASQEDLN LINISIDDEE HQEDGKDWTS KLGVNLRYYV KFRKHSASTQ  900
EQLPSALSGM FSSSSTVSIL SSLRWLRRKS RTPAKPQCII AEKPHISATA TGGVQTLKVI  960
DGDNIKAIQV YQSRKKKTSD LAFKDHKHPV KELGSCNQNV AVIGKSEYVA APVIDNVENL  1020
FTVPISMMEN PEISQNSIAK SSSPSVGFQC FSGLNGLNNT TIVSVPVIFQ YNQLYYNTPT  1080
SNSSVLYNEE KNGGETSLDS DGGRSKKLEL QDEMAIPELK SSEDKQLIVT GSEANFHDSG  1140
NLSSEHLLLS SDEEAQHMQE KTQTTEEQNA EGSPRFSLLA ENHSYVPQLL TVESEMHIEA  1200
SMAEELRSSN CSVHCEEELC SVIENEDEMQ KIEASTGNNN CSPDVFVARD ERRASTLNIK  1260
SYVRRKNKRK WDAERQGAEE HMETENTQKK LEIQDKEAAQ QTCNGFIRSP CEGLRPRNGK  1320
LQSYVTEVKV ADRRRGSNSM GRRKRAAAET SDTFECDIEG CRMRFRTKAE IQLHKRNRCT  1380
YDECRKRFSN HKYAMRHQRV HNDERPFKCS WKGCKMSFKW EWARTEHLRL HTGERPYKCK  1440
VAGCGMSFRF VSDFSRHRRK TGHFVSTNRP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1264	1270	RRKNKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein