PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020681024.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 308aa    MW: 34456.5 Da    PI: 4.6209
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020681024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32e-061912281254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +A+eYIk+L
  XP_020681024.1 191 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKYL 228
                     677888999*******998.....8*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MAEEFQGSVS SFNFWSSLRC SDIFSCSTAL NAGDIEETFG FFPASNEIVE LSKANSFDYF  60
TQPSSLDPLS SSVDWSQSFL ESSETNFQAV QLEDSAATRE CEIIQMDFTE TSQDSSKDMI  120
CHGSFQSNQT LSESAMAELQ ILPTVEFPSN GSLFSSTSAK SNTAASRDPT PPIAKKIRIE  180
TPSPLPAFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE AIEYIKYLHQ QVNGLSNPYL  240
INRQQKTKQQ ILERQEKNGD RAKKDLRSLG LCLVPISTTF TVASNELPPD FWTQLWSMEN  300
YCSIRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-41bHLH family protein