PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680309.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CAMTA

Protein Properties

Length: 1022aa MW: 115762 Da PI: 5.7158

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680309.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	177.7	1.4e-55	20	134	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL n++k+ ++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+v+vl+cyYah+e++++fqr XP_020680309.1 20 QEaQHRWLRPIEICEILRNYHKFCIAPEPPNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDDENFQR 114 5559***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhyle 116 r+yw+Leeel +ivlvhy+ XP_020680309.1 115 RSYWMLEEELMHIVLVHYRA 134 ****************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1022 aa Download sequence
MAEARISGVT LPLNLEQILQ EAQHRWLRPI EICEILRNYH KFCIAPEPPN KPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDDE NFQRRSYWML 120 EEELMHIVLV HYRAIKGSKA NFLQPREDGA IARIAHADSP AHSTSSANQS QSPSLATDLE 180 SPNSTHLSEF ENDSADIFQP SSRYNSFLKM QQYGPWMKGN LANACDPALE KDDPFVQAGM 240 DRLANESDGG LRFTGTKPMN NDMASWHEIL ERCSTGLQSS TFDVIVASTC ANTMVNFPRQ 300 NPVADILNGG FLDAKEDVTT VVDKPMLQFD DEVVDSLVPF NTRVENIQTS DVNHMKNQSD 360 LSLIDYQGLK KYDSFSRWAS NELGEVDDSQ ITLNSGIYWS TLESDSVIAE SSVQNQEHFD 420 TYLMSPLISH DQLFSIIDFS PNWTYAEMET KVLVKGKFFL NKEDVQKYRW SCMFGEIEVQ 480 ADILADGTLC CHTPSHKPGR VPFYVTCSNR LACSEIREFE YKMSKMHELG NTDSDGSDAY 540 DIDLLFRLEK LLILEDFDHS SPDCSHTRER PHINCTVCSM IMEVDDELFN LFKHTPDEDL 600 SHINAENQLL EESLKEKLHV WLLHKVGEDG KGPNVLDKEG QGVLHLAAAL GYDWAIKPII 660 AAGVGINFRD LHGWTALHWA AFFGRERTVV TLVALDASPG ALTDPTPEFP SGRTPADLAS 720 QNGYKGIAGF LAESSLFKHL RELTLKDSES CDLTESSGIL GYHHGADKGS SHHAFGGTET 780 SLKDSLSAVR NATEAAARIY QVFRMQSFHR KKLTDYVDEN CGVSNEDALS LIYVKSNKSG 840 HHVMPVHTAA IKIQNKFRGW KGRKEFLSIR QHIVKIQAHV RGHQVRKHYR KILWSVGIVE 900 KVILRWRRKG SGLRGFRSEE PPEGPSNENQ VIKEDDYDFL QEGRKQTEAR LEKALARVKS 960 MVQYPEAIDQ YRRLLNVVEE LQESDFIQAE TPNEIMEPVG VVDLMLELEG LLQDDPHMPP 1020 NW

Sequence ? help Back to Top

Protein Sequence Length: 1022 aa Download sequence

MAEARISGVT LPLNLEQILQ EAQHRWLRPI EICEILRNYH KFCIAPEPPN KPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDDE NFQRRSYWML  120
EEELMHIVLV HYRAIKGSKA NFLQPREDGA IARIAHADSP AHSTSSANQS QSPSLATDLE  180
SPNSTHLSEF ENDSADIFQP SSRYNSFLKM QQYGPWMKGN LANACDPALE KDDPFVQAGM  240
DRLANESDGG LRFTGTKPMN NDMASWHEIL ERCSTGLQSS TFDVIVASTC ANTMVNFPRQ  300
NPVADILNGG FLDAKEDVTT VVDKPMLQFD DEVVDSLVPF NTRVENIQTS DVNHMKNQSD  360
LSLIDYQGLK KYDSFSRWAS NELGEVDDSQ ITLNSGIYWS TLESDSVIAE SSVQNQEHFD  420
TYLMSPLISH DQLFSIIDFS PNWTYAEMET KVLVKGKFFL NKEDVQKYRW SCMFGEIEVQ  480
ADILADGTLC CHTPSHKPGR VPFYVTCSNR LACSEIREFE YKMSKMHELG NTDSDGSDAY  540
DIDLLFRLEK LLILEDFDHS SPDCSHTRER PHINCTVCSM IMEVDDELFN LFKHTPDEDL  600
SHINAENQLL EESLKEKLHV WLLHKVGEDG KGPNVLDKEG QGVLHLAAAL GYDWAIKPII  660
AAGVGINFRD LHGWTALHWA AFFGRERTVV TLVALDASPG ALTDPTPEFP SGRTPADLAS  720
QNGYKGIAGF LAESSLFKHL RELTLKDSES CDLTESSGIL GYHHGADKGS SHHAFGGTET  780
SLKDSLSAVR NATEAAARIY QVFRMQSFHR KKLTDYVDEN CGVSNEDALS LIYVKSNKSG  840
HHVMPVHTAA IKIQNKFRGW KGRKEFLSIR QHIVKIQAHV RGHQVRKHYR KILWSVGIVE  900
KVILRWRRKG SGLRGFRSEE PPEGPSNENQ VIKEDDYDFL QEGRKQTEAR LEKALARVKS  960
MVQYPEAIDQ YRRLLNVVEE LQESDFIQAE TPNEIMEPVG VVDLMLELEG LLQDDPHMPP  1020
NW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein