PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020679603.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 813aa MW: 94017.1 Da PI: 7.581

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020679603.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.2	6.5e-24	37	121	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+e+GF vrk+ k++ ng+++ rtf+C+keg+ ++ k+ +++r+ rtgC a++ v++++dgk++vt++e eHnHel+ XP_020679603.1 37 QFYCFYAREMGFGVRKHLVKRR-SNGTVYARTFCCYKEGFCRTLKEG----KKPRPDARTGCGAHIGVRLMDDGKFHVTEFEAEHNHELV 121 6***********99876665.8999*********9998766....99*********************************97 PP
2	FAR1	77.4	2.7e-24	195	286	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA ++GFsvrk+ k+ +++g +++rt+vC keg+++++++ ++ r +++ +rtgC a++++k +k+g+++vt++el+HnH+l+ XP_020679603.1 195 EFYINYAARIGFSVRKHLVKR-RTSGIVYSRTYVCHKEGQSRKTNELkrdQQLVRGPKPYERTGCAASMTIKIMKNGRYRVTEFELKHNHPLV 286 6***********9987666.59999********999887764434445569********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence
MSQAAEQPTS TSNEGTSEKS CVPKLHMVFE SDEKAYQFYC FYAREMGFGV RKHLVKRRSN 60 GTVYARTFCC YKEGFCRTLK EGKKPRPDAR TGCGAHIGVR LMDDGKFHVT EFEAEHNHEL 120 VEKVPEFQLE SSNELVVDGK IRKRIFRGKL AGRLVHKSYI PSNCLSNPVP LENVDNEDWV 180 PKVDIEFEDD EEAYEFYINY AARIGFSVRK HLVKRRTSGI VYSRTYVCHK EGQSRKTNEL 240 KRDQQLVRGP KPYERTGCAA SMTIKIMKNG RYRVTEFELK HNHPLVIPSK AHLFRWRWRR 300 GLVGPPVDFI ALGNIQENAL ELSDNKNEAP ESNESPTFLS TRYKNNEPSK HLAEMLPGDV 360 GAVMQYAQEK QAEDPSFYYA LHLNQNEKLA SIFWADAKSM VDFECFGDVL CLDTTYRSRD 420 YGRPFAPFVG VNNHKQIIIF GAALLYGDSE DSFKWLFKTF ETAMSGKQPN VVLTDRCEAM 480 SNAVAAVWPD TTHRICVWHI HNDALKHLNF VFQGSTTFAK DFSRCMYDIE DEEDFVLEWT 540 SLIDKYDLGS NSWLTKLFED REKWSLAYGR QAFYADIRSS LVRESISHKL KVHLGLECKL 600 LDFFKHYESE LNERRYVELQ ADFHACHSYG KMPASKMLRQ AANAYTPAVF KIFQIEFELS 660 MDLMVYNCDN DQATYMYKVK AENCSKEYIV RFDTAGNTII CSCRKFDFMG IQCRHVLKVL 720 DIINIKELPP QYILKRWRKD AKSVNLRSIH EIEVDNENKS ALGKCCSSLR YICNRFAARA 780 AETEESCAFI ETLSNELMDE VCKILKRTLP ERP

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence

MSQAAEQPTS TSNEGTSEKS CVPKLHMVFE SDEKAYQFYC FYAREMGFGV RKHLVKRRSN  60
GTVYARTFCC YKEGFCRTLK EGKKPRPDAR TGCGAHIGVR LMDDGKFHVT EFEAEHNHEL  120
VEKVPEFQLE SSNELVVDGK IRKRIFRGKL AGRLVHKSYI PSNCLSNPVP LENVDNEDWV  180
PKVDIEFEDD EEAYEFYINY AARIGFSVRK HLVKRRTSGI VYSRTYVCHK EGQSRKTNEL  240
KRDQQLVRGP KPYERTGCAA SMTIKIMKNG RYRVTEFELK HNHPLVIPSK AHLFRWRWRR  300
GLVGPPVDFI ALGNIQENAL ELSDNKNEAP ESNESPTFLS TRYKNNEPSK HLAEMLPGDV  360
GAVMQYAQEK QAEDPSFYYA LHLNQNEKLA SIFWADAKSM VDFECFGDVL CLDTTYRSRD  420
YGRPFAPFVG VNNHKQIIIF GAALLYGDSE DSFKWLFKTF ETAMSGKQPN VVLTDRCEAM  480
SNAVAAVWPD TTHRICVWHI HNDALKHLNF VFQGSTTFAK DFSRCMYDIE DEEDFVLEWT  540
SLIDKYDLGS NSWLTKLFED REKWSLAYGR QAFYADIRSS LVRESISHKL KVHLGLECKL  600
LDFFKHYESE LNERRYVELQ ADFHACHSYG KMPASKMLRQ AANAYTPAVF KIFQIEFELS  660
MDLMVYNCDN DQATYMYKVK AENCSKEYIV RFDTAGNTII CSCRKFDFMG IQCRHVLKVL  720
DIINIKELPP QYILKRWRKD AKSVNLRSIH EIEVDNENKS ALGKCCSSLR YICNRFAARA  780
AETEESCAFI ETLSNELMDE VCKILKRTLP ERP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-103	FAR1 family protein