PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678755.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 813aa MW: 93369.2 Da PI: 6.731

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678755.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65	2e-20	88	174	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GF+vrk k+++ + +++i k+ ++Cskeg + ++ ++ k++ +r+ rtgCka ++ + +++g+w+vtk+ eHnH+l+ XP_020678755.1 88 LYRDYGRNMGFNVRKGKQYYYTGSRNIRKKYYYCSKEGAKIDKLSS--KSKFHRKDVRTGCKAFVQFTVDEKGQWKVTKMGVEHNHDLV 174 7************************************9999888..9999*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence
MIPPASGFHQ GHELLYCRME NAAEKTVQDS DRDDASHPSD GEVGAFSSNT SGEVDSCNLE 60 LSEVLSPEQA KKELMGQVVQ NEKEAYRLYR DYGRNMGFNV RKGKQYYYTG SRNIRKKYYY 120 CSKEGAKIDK LSSKSKFHRK DVRTGCKAFV QFTVDEKGQW KVTKMGVEHN HDLVKPKERH 180 VLKPISSSKS AEASLPYSTM DVEIHTLNAD SGGDTENGDS FVNLQQMAQI NVEETRSLIS 240 YFKRKAGEEG MFYWDVQVDH EGRMTNIFWR DGRSRIDYDC FCDVVSFDST SHIKKYGFTC 300 VPLIGVNHHW QNVMFGCAFL LDETEASFVW LLKTFLESMG NRPPRTILTN DDVALERAIE 360 LVLPSTRHRL CLWHILKKAS SCFGSLNSSK RLLDSFDKCL QGCDSEMEFE ETWRKMVLDY 420 GVEDHEWLNN LYKNRQKWCS VLSKDCFDGG IESPRRSESF ENVLNSIVDR SISLGEFTHE 480 FEKLLEDWRQ NEEKEDLACR QDGPRRAIEH SDILNHAAKL YTHKMYKIFE EEFLDGCCAA 540 SFREIHCGGD LYKFELTMQG RDSKVWIVHL DISKMELCCT CNKFNTMGIL CSHALKALSL 600 KNVNRIPENY IIKRWTKDAR KGVYRLEGSW QLLGEDLEDE FKYHNLAIRY AYDLVMRSQG 660 HKQARKIIWD SFLRGERQLD SFFEKKCLDE NSGNRDNSDE SECEEAGEKS LRTSSLRKSN 720 SRKTKKKRSV DLYRGDEFGE PNCSAFPPLC NSTSGTQLGF FPSLSPGCFS PPMYTPLSQM 780 PTQISNINWV LGSPPSYASN AQGNQNAAQN LHL

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence

MIPPASGFHQ GHELLYCRME NAAEKTVQDS DRDDASHPSD GEVGAFSSNT SGEVDSCNLE  60
LSEVLSPEQA KKELMGQVVQ NEKEAYRLYR DYGRNMGFNV RKGKQYYYTG SRNIRKKYYY  120
CSKEGAKIDK LSSKSKFHRK DVRTGCKAFV QFTVDEKGQW KVTKMGVEHN HDLVKPKERH  180
VLKPISSSKS AEASLPYSTM DVEIHTLNAD SGGDTENGDS FVNLQQMAQI NVEETRSLIS  240
YFKRKAGEEG MFYWDVQVDH EGRMTNIFWR DGRSRIDYDC FCDVVSFDST SHIKKYGFTC  300
VPLIGVNHHW QNVMFGCAFL LDETEASFVW LLKTFLESMG NRPPRTILTN DDVALERAIE  360
LVLPSTRHRL CLWHILKKAS SCFGSLNSSK RLLDSFDKCL QGCDSEMEFE ETWRKMVLDY  420
GVEDHEWLNN LYKNRQKWCS VLSKDCFDGG IESPRRSESF ENVLNSIVDR SISLGEFTHE  480
FEKLLEDWRQ NEEKEDLACR QDGPRRAIEH SDILNHAAKL YTHKMYKIFE EEFLDGCCAA  540
SFREIHCGGD LYKFELTMQG RDSKVWIVHL DISKMELCCT CNKFNTMGIL CSHALKALSL  600
KNVNRIPENY IIKRWTKDAR KGVYRLEGSW QLLGEDLEDE FKYHNLAIRY AYDLVMRSQG  660
HKQARKIIWD SFLRGERQLD SFFEKKCLDE NSGNRDNSDE SECEEAGEKS LRTSSLRKSN  720
SRKTKKKRSV DLYRGDEFGE PNCSAFPPLC NSTSGTQLGF FPSLSPGCFS PPMYTPLSQM  780
PTQISNINWV LGSPPSYASN AQGNQNAAQN LHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-88	FAR1 family protein