PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678744.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HB-other

Protein Properties

Length: 1587aa MW: 177625 Da PI: 4.8216

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678744.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	45.8	1e-14	25	79	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++q+++Le+++ ++ +s+++r+eLA+k++L+ r +++WF N+R + k+ XP_020678744.1 25 KRKMKTPSQIDVLEKAYTVSSRLSEQMRQELAQKTELSSREISMWFANKRFQGKQ 79 89999*********************************************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1587 aa Download sequence
MEFGEGGGGG SPRVAVDGVP KQQAKRKMKT PSQIDVLEKA YTVSSRLSEQ MRQELAQKTE 60 LSSREISMWF ANKRFQGKQA HLPREPKKEE FSPLPLHSSP NGGGSGFVLA ACHFMDSDTN 120 ESSIREVCSK LTRPKPAAPQ LKKKTQLQHM MSQQQPSHEA LDPLVLTFME RKLGGRLRED 180 GPLVGVNFDP LPPGAFGSPL CGGNETVRKL KQPTRAPKGK SILKQNAGSS KVSSVFQRTD 240 SSCMQNPIWR MPIDEVGSSV NLDSVHNLGS KLPCFSSGKQ HPQKKEMHPS HSLQADAQFT 300 IYPVNDIVDK FVLTDTLTND VTSQMERLHK SKETQTTDKV EVLDRLVACE KQCIKRKSEV 360 QALIDKEMYD HERHNGEAVI LERRSNEVTL QYVDQPVCYK KALNKVNMEE EKVRQQEELQ 420 LGTTAMEEAV NKTFIAHGNI QGNMQLIEDE QLELMKLAAS SKGLPSINLL DNDTLDTLHS 480 FQDMLGAFPP ESVLMKRPFA VPPWTDSDEN VGNLLMVWKF LVTFAGDFGL WPFTLEEFAQ 540 ALHDQDSRLL GEIHVALLKY IIRDLDDVKN ARAYIPCGIE DNSDKFGITF LNIVDGAQEW 600 GFDIHFWKSK LNFLTWPEIL RQFALSAGFG TKLKKAGYAC CHGDKNGVNA GDRVASLDKN 660 VGGSNSALVQ QKDKSSSCDS SYQLTTGTLE FAVFHTLLLI GSEGLTPVEV ADYIKEHRLY 720 DLTTIESAHT SINSILAKDA ELFERVGSIT YRVKPCFGKD PSIVEKILNG ATKSIQLYGT 780 SHFAVKLSDR NFEDLGLADR DEDFGDSFDE HPLGGKFTSE SSCDLNSTKV STSLNKSTQY 840 LHPDEPGLIN ETGFENVDGV SLLFLESAED ENFLSMQNDE FFESIHEVSS ASGDVKNSEQ 900 FSESWVQELI EGEYSSLSTE ERLKVLVALV GVVVEGNSFH IFIEERLKEA QASKKMMLAK 960 MRLDRKLHEE VYGIMDDSTC VHANPKSFNK QAPDLCRYST LNDVSSQKKE LGQQFSSNSS 1020 CILPEPLEHA PASDLSQLEL YIDRTAEMLH PFRFLPLGLD RRHNRYWQFS TSSSRNDPGS 1080 GRIFFESKDG FWRVIDSDEA FDALLAVLDT HGIRESHLCF MLKRVEIMFK DTTKRRKSRE 1140 FYAESTTDTL QTTLAPDSCT ANHNISSISV LPAYDTIQSS ASLKIDLVSN EESSASKKYL 1200 NFMKWMWEEC FNPRLLCAMR YGTKRCLQLL ETCHICYQPY LADERHCASC HLTFGIPMNG 1260 YEDFSEHVGR CEADFKLQIS IPFIPISIQL LKAQLAIIES LTILENAIKP DCLCPDFVTT 1320 NELLSSETDF LGNTSTEAVR LIPWIPETTS AVALRLLDLD CSIPYMLQHG REPLEGTEAG 1380 EFLVLPRSTV VEPAHQVESA ISDNTDDQNG GQGFHTVENC LHQEPGYDGG GQRSCTNMQN 1440 IIHGEDNSDL EDFSSSGNSD EVEINFESSD SLQGVKIPAT WSYKTNAESA NIYSKAGVMD 1500 DEDEESAHKD EFGGGEAVES NECHRWQETV NSYFEGYLDE QESEGRNSKI VLEQLEDRWD 1560 VKNSRWEIAF STKSADGEEN SSSVNTK

Sequence ? help Back to Top

Protein Sequence Length: 1587 aa Download sequence

MEFGEGGGGG SPRVAVDGVP KQQAKRKMKT PSQIDVLEKA YTVSSRLSEQ MRQELAQKTE  60
LSSREISMWF ANKRFQGKQA HLPREPKKEE FSPLPLHSSP NGGGSGFVLA ACHFMDSDTN  120
ESSIREVCSK LTRPKPAAPQ LKKKTQLQHM MSQQQPSHEA LDPLVLTFME RKLGGRLRED  180
GPLVGVNFDP LPPGAFGSPL CGGNETVRKL KQPTRAPKGK SILKQNAGSS KVSSVFQRTD  240
SSCMQNPIWR MPIDEVGSSV NLDSVHNLGS KLPCFSSGKQ HPQKKEMHPS HSLQADAQFT  300
IYPVNDIVDK FVLTDTLTND VTSQMERLHK SKETQTTDKV EVLDRLVACE KQCIKRKSEV  360
QALIDKEMYD HERHNGEAVI LERRSNEVTL QYVDQPVCYK KALNKVNMEE EKVRQQEELQ  420
LGTTAMEEAV NKTFIAHGNI QGNMQLIEDE QLELMKLAAS SKGLPSINLL DNDTLDTLHS  480
FQDMLGAFPP ESVLMKRPFA VPPWTDSDEN VGNLLMVWKF LVTFAGDFGL WPFTLEEFAQ  540
ALHDQDSRLL GEIHVALLKY IIRDLDDVKN ARAYIPCGIE DNSDKFGITF LNIVDGAQEW  600
GFDIHFWKSK LNFLTWPEIL RQFALSAGFG TKLKKAGYAC CHGDKNGVNA GDRVASLDKN  660
VGGSNSALVQ QKDKSSSCDS SYQLTTGTLE FAVFHTLLLI GSEGLTPVEV ADYIKEHRLY  720
DLTTIESAHT SINSILAKDA ELFERVGSIT YRVKPCFGKD PSIVEKILNG ATKSIQLYGT  780
SHFAVKLSDR NFEDLGLADR DEDFGDSFDE HPLGGKFTSE SSCDLNSTKV STSLNKSTQY  840
LHPDEPGLIN ETGFENVDGV SLLFLESAED ENFLSMQNDE FFESIHEVSS ASGDVKNSEQ  900
FSESWVQELI EGEYSSLSTE ERLKVLVALV GVVVEGNSFH IFIEERLKEA QASKKMMLAK  960
MRLDRKLHEE VYGIMDDSTC VHANPKSFNK QAPDLCRYST LNDVSSQKKE LGQQFSSNSS  1020
CILPEPLEHA PASDLSQLEL YIDRTAEMLH PFRFLPLGLD RRHNRYWQFS TSSSRNDPGS  1080
GRIFFESKDG FWRVIDSDEA FDALLAVLDT HGIRESHLCF MLKRVEIMFK DTTKRRKSRE  1140
FYAESTTDTL QTTLAPDSCT ANHNISSISV LPAYDTIQSS ASLKIDLVSN EESSASKKYL  1200
NFMKWMWEEC FNPRLLCAMR YGTKRCLQLL ETCHICYQPY LADERHCASC HLTFGIPMNG  1260
YEDFSEHVGR CEADFKLQIS IPFIPISIQL LKAQLAIIES LTILENAIKP DCLCPDFVTT  1320
NELLSSETDF LGNTSTEAVR LIPWIPETTS AVALRLLDLD CSIPYMLQHG REPLEGTEAG  1380
EFLVLPRSTV VEPAHQVESA ISDNTDDQNG GQGFHTVENC LHQEPGYDGG GQRSCTNMQN  1440
IIHGEDNSDL EDFSSSGNSD EVEINFESSD SLQGVKIPAT WSYKTNAESA NIYSKAGVMD  1500
DEDEESAHKD EFGGGEAVES NECHRWQETV NSYFEGYLDE QESEGRNSKI VLEQLEDRWD  1560
VKNSRWEIAF STKSADGEEN SSSVNTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein