PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678735.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 271aa MW: 30758.3 Da PI: 10.5329

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678735.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.1	1.3e-14	22	110	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ e+ +L++a ++ +l+rg+ ++++W+ev++++ r r+ +qCk++++ l+k+yk +k+ +++ s++p++++l+ XP_020678735.2 22 CWSEGETSTLVDAWGDRYLELNRGNIRQKQWQEVADAVnarpsGGRRPPRTDVQCKNRIDTLKKKYKIEKAKISDG--AIASQWPFYSRLD 110 7***********************************77655444457899******************98..55668***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MERKNAESAR RPNPAMPYRE DCWSEGETST LVDAWGDRYL ELNRGNIRQK QWQEVADAVN 60 ARPSGGRRPP RTDVQCKNRI DTLKKKYKIE KAKISDGAIA SQWPFYSRLD MLVGSSVPPI 120 KPTPSPSPPL ALPLPTFIRR SYSAAAAAVA DGDSGSLSKS SRSSMERRMS RERKRKREIG 180 EGDGMRELAR GIGRLAEIYE NLEAEKHRQM IELEKQRMEF IKGLEFQRMQ MFVDTQVQLA 240 KIKRTRRSDA GEMGLSIAFP SLLQLLVLSM S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-32	Trihelix family protein