PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678032.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 283aa MW: 32379.1 Da PI: 6.878

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678032.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.1e-14	98	149	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+++P + + K + a+i A+ Y+k+L+ XP_020678032.1 98 QRMTHIAVERNRRRQMNDYLSVLRSIMPAS---YVHKSDQASIIGGAISYVKELE 149 79**************************...9****************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MALEAVVFPK DPFTYSSCKE FSFLSNSELD RWNFEFEFAL QENSMWSVLP PSSELVAADG 60 DTFNEQNPAA AAAIGGGISK KKRRRLKRCK NKEEAESQRM THIAVERNRR RQMNDYLSVL 120 RSIMPASYVH KSDQASIIGG AISYVKELEY LLQTLEAQKK ISHPLTFLSS DQDRNTNKME 180 EMEAMDAAAD IEVTMVESHA NLKVLSKKQP RQLMKMVIGL QNLSLTTLHL NLTTINEMVL 240 YSFSLKVTFL SSQCYDFHVN EEKFVSFGVL IHLFDSYCRL KFE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	85	KKKRRR
2	80	88	KKKRRRLKR
3	81	88	KKRRRLKR
4	82	86	KRRRL
5	99	110	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	1e-46	bHLH family protein