PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020677978.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 447aa MW: 49476 Da PI: 6.3847

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020677978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.2	6.9e-21	94	209	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 +Wt+++v++L+ ++ +++++ + lkk++W++vs++m e+gf +sp+qC++k+++lnkryk+++e XP_020677978.1 94 KWTDSMVRLLVWVVHSVGDDGAGVEcpeqqhkgkkssslqlssssaaaaaagmqLKKGKWKSVSRAMLEKGFYVSPQQCEDKFNDLNKRYKRVNE 188 688888888888888555554432223333444455566666677777777777*************************************** PP trihelix 67 gekkr.tsessstcpyfdqle 86 +k+ +++++++ +++d+++ XP_020677978.1 189 LLGKGtACKVVENPALLDSMD 209 *55**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MLGLKMSFQQ QNQAFPSPNP LSQPQQQRNL SPFASQLQSE HAYGCGGVRG KQLQQTHSSE 60 DELGFGEEAT ATAAAAAAER VSQPQSPSPW QRMKWTDSMV RLLVWVVHSV GDDGAGVECP 120 EQQHKGKKSS SLQLSSSSAA AAAAGMQLKK GKWKSVSRAM LEKGFYVSPQ QCEDKFNDLN 180 KRYKRVNELL GKGTACKVVE NPALLDSMDH LSHKAKAEAR KLLSSKHLFF REMCAYHNTC 240 LSASAAALQP DHSSSVSPAT IKIRKGGGSL CTVEEESGHL CHDDDVADDE EEEDDYNEDE 300 SDDEEEDDNG SLGAKRKALM SPAASSPLSL SLSSPSGSSS VQGEQQQRQW LRMKAAELEE 360 QRVVYQNRAL QLEKQRFKWL RFSSNKEREM EKTWLRNERL RLENERMLLL LQQKEIRLLE 420 SAGNAGGDAN GGSNGSYQFT AADRNHN

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MLGLKMSFQQ QNQAFPSPNP LSQPQQQRNL SPFASQLQSE HAYGCGGVRG KQLQQTHSSE  60
DELGFGEEAT ATAAAAAAER VSQPQSPSPW QRMKWTDSMV RLLVWVVHSV GDDGAGVECP  120
EQQHKGKKSS SLQLSSSSAA AAAAGMQLKK GKWKSVSRAM LEKGFYVSPQ QCEDKFNDLN  180
KRYKRVNELL GKGTACKVVE NPALLDSMDH LSHKAKAEAR KLLSSKHLFF REMCAYHNTC  240
LSASAAALQP DHSSSVSPAT IKIRKGGGSL CTVEEESGHL CHDDDVADDE EEEDDYNEDE  300
SDDEEEDDNG SLGAKRKALM SPAASSPLSL SLSSPSGSSS VQGEQQQRQW LRMKAAELEE  360
QRVVYQNRAL QLEKQRFKWL RFSSNKEREM EKTWLRNERL RLENERMLLL LQQKEIRLLE  420
SAGNAGGDAN GGSNGSYQFT AADRNHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	2e-54	Trihelix family protein