PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020677675.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 284aa MW: 31491 Da PI: 4.4844

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020677675.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.5e-11	124	166	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L XP_020677675.1 124 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 166 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MELDEQAFLE DLLALRRPDA WDSGDLFGAE QIQPFDCFSD APSIYPPLDC FNTDAYCQML 60 AGGGMCAYYS AFPPDIPPAI PPEMSCKVEL PSSAAVTATA TDAPPTTVER RKKKVDGMPS 120 KNLMAERRRR KRLNDRLSML RSVVPKISKM DRTSILGDTI DYMKELLEKI KRLQEDTEAG 180 GAEQANLLGL FKDLNPNEIL FDVERREGDT RIEICCAAKP GLLLSTVNTL EAFGLDIQQC 240 VVSCFNDFGL QASCSENMEQ RAVMSSEDIK QALFRNAGYG GKCM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	132	RRKKKVDGMPSKNLMAERRRRKR
2	111	133	RRKKKVDGMPSKNLMAERRRRKR
3	112	134	RRKKKVDGMPSKNLMAERRRRKR
4	126	133	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	8e-79	bHLH family protein