PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020676768.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 320aa    MW: 34348.5 Da    PI: 6.1722
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020676768.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09167211554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+       K + a++L + v+Y+k L
  XP_020676768.1 167 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEIVDYVKFL 211
                     99***********************7.....5****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MANPPQPPPD GITDDFFEQI FSMPGYTTGD GSLAGGDGSS VPGIVQQFNS GDGSSPGTFS  60
VFPLGLSLEQ GRPGFAVAEE GSCGGGGVGK RLREGVEAKT SSDAERDSIQ LPSLFPAFGH  120
VQSHQIRHNS PQILHGQSLQ AQVASASQVP APRPRVRARR GQATDPHSIA ERLRRERIAE  180
RMRALQELVP NTNKTDRAAM LDEIVDYVKF LRLQVKVLSM SRLGGAGAVA QLVADIPLSQ  240
TEGDSSSDGR TKQQVWEKWS TDGTERQVAK LMEEDVGAAM QFLQSKALCM MPISLAAAIY  300
HTQHQPENPS VKNEPNTPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-58bHLH family protein