PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020674906.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 499aa MW: 55244.9 Da PI: 6.1131

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020674906.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.3e-13	356	402	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_020674906.1 356 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 402 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MGTCGLDGGV VNGVAWSDEE QSMAVAVLGP NAFEYLTTCH VSPDSLFSAS GAAVADLQTK 60 LVNLVEASGG DGWSFAIFWQ ISRFKSGDLV LGWGDGHLRE PEIESLCSVD DVQQKRRKRV 120 LQKLHLLHGG SDDENYALRL DCVTDAEMFF LASMYFAFPN GEGAPGRALL HRKHIWNAPS 180 TASEDYCVRA YLARAAGFHT IVLVPFENGV LELGSVNLIP ESFEALMMIR SVFFKGAEWP 240 KILGKDLNIG QAERPFELIA NNRKVINSNT NQGIVPQQLN STNGLMVARA EIERNGIGII 300 HQKQQLPPAS RRIDFACLEN SDAEASCKED KPSIIDERRP RKRGRKPANG REEPLNHVEA 360 ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAIAYITD LQNKLKEIES ERKVTPGVEV 420 QTGQEEVIVQ VTCPLDSHPT YNVIQAFKEL HFTAVESKLL TTDETVLHTF VVKLPSGTEQ 480 AAKEKLLTVI PCQMNLPGQ

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MGTCGLDGGV VNGVAWSDEE QSMAVAVLGP NAFEYLTTCH VSPDSLFSAS GAAVADLQTK  60
LVNLVEASGG DGWSFAIFWQ ISRFKSGDLV LGWGDGHLRE PEIESLCSVD DVQQKRRKRV  120
LQKLHLLHGG SDDENYALRL DCVTDAEMFF LASMYFAFPN GEGAPGRALL HRKHIWNAPS  180
TASEDYCVRA YLARAAGFHT IVLVPFENGV LELGSVNLIP ESFEALMMIR SVFFKGAEWP  240
KILGKDLNIG QAERPFELIA NNRKVINSNT NQGIVPQQLN STNGLMVARA EIERNGIGII  300
HQKQQLPPAS RRIDFACLEN SDAEASCKED KPSIIDERRP RKRGRKPANG REEPLNHVEA  360
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAIAYITD LQNKLKEIES ERKVTPGVEV  420
QTGQEEVIVQ VTCPLDSHPT YNVIQAFKEL HFTAVESKLL TTDETVLHTF VVKLPSGTEQ  480
AAKEKLLTVI PCQMNLPGQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	338	346	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46510.1	1e-126	bHLH family protein