PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673690.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 311aa MW: 35835.8 Da PI: 5.8305

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673690.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.8e-05	75	97	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F++ L++H H XP_020673690.1 75 CTydGCGKTFTDAGALRKHTHIH 97 78889**************9887 PP
2	zf-C2H2	17.9	8.4e-06	102	126	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp Cgk F ++s LkrH H XP_020673690.1 102 YVCPveGCGKKFLDSSKLKRHNLIH 126 99*******************8777 PP
3	zf-C2H2	15	7.1e-05	171	196	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C k + + + L+ H+r+ H XP_020673690.1 171 YVCPfaGCEKAYIHEYKLNLHLRKeH 196 9***********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MESYEDRSRL DPKTRSPTVR WVKEWVPQDV VATGGKCYLL KWVTEDKWNA LREKTKELEL 60 QERKPKPATE MFFLCTYDGC GKTFTDAGAL RKHTHIHGER QYVCPVEGCG KKFLDSSKLK 120 RHNLIHTGEK SHYCPYEGCG KDAMVDMRPQ EKPSNAAKAP VLNSASSDRP YVCPFAGCEK 180 AYIHEYKLNL HLRKEHPGHN PEEGYKTAPM TAGEHWYGEL NDQDALLNNK YSKRGKASLS 240 RKLPPAKVAK QRVSSPNPVV SNDAQKRRQN KELDEDSEET EEDQEEEDEE EENGWRYLEA 300 NRDDEETEDE D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	2e-80	C2H2 family protein