PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020672380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | CAMTA | ||||||||
Protein Properties | Length: 228aa MW: 25979.4 Da PI: 9.6285 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 180.8 | 1.6e-56 | 22 | 138 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl+++ei++iL n++k+ ++ e++++p+sgsl+L++rk++ryfr+DG++w+kkkdgktv+E+hekLK g+++vl+cyYah+e+++ fqr XP_020672380.1 22 QEaQHRWLRPTEICEILRNYHKFCIAPEPPNKPTSGSLFLFDRKVLRYFRRDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEDKEGFQR 116 5559******************************************************************************************* PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Le +l +ivlvhy+evk XP_020672380.1 117 RSYWMLEGALMHIVLVHYREVK 138 *******************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MAVNRRTGVA PVLGEDIEKI LQEAQHRWLR PTEICEILRN YHKFCIAPEP PNKPTSGSLF 60 LFDRKVLRYF RRDGHNWRKK KDGKTVKEAH EKLKAGSIDV LHCYYAHGED KEGFQRRSYW 120 MLEGALMHIV LVHYREVKGS KASFIQQKKD AEAVRNSEFD SPASSNSSAN PSHVPSQFSG 180 YGSRNGTQQS EYEDADSLYL KRSSIHQIIA RQVPDTTLSL RCSGMGLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09410.2 | 3e-73 | CAMTA family protein |