PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672054.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HSF

Protein Properties

Length: 444aa MW: 49760.2 Da PI: 5.213

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.2	8.4e-36	11	102	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d+++++++sws++g+sf+v++++ f++++LpkyFkh+nf+SFvRQLn+YgF+k + e+ weF+++ F +g+k+ll++ XP_020672054.1 11 FLTKTYEMVDDSATDSVVSWSNSGDSFIVWNTTVFSRDLLPKYFKHNNFSSFVRQLNTYGFRKADPEQ---------WEFANEDFARGQKHLLNN 96 9************************************************************99988.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_020672054.1 97 IHRRKP 102 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MEGGSNSPPP FLTKTYEMVD DSATDSVVSW SNSGDSFIVW NTTVFSRDLL PKYFKHNNFS 60 SFVRQLNTYG FRKADPEQWE FANEDFARGQ KHLLNNIHRR KPVHSHSLQA QGSASVSLSE 120 AERYELEGNI ERLKRDKDSL LLELNGHIEQ QYGLERQMLS LEEKMQVLLD RQRDIMEFLS 180 SVVQVPGFLS NIVQQPVFHC KKRRLLVHDC IQEDAGKNQI FEIQTTSTQK PETVSIQALD 240 LVPFEKMEST LNTLETFFRN VSLASSGEMY CDFGSVHSIP YAVLPTDSHI AVRENVVNSP 300 STSPKLHSSS PCVGDFHSSP ELADSTSFVE NSGVSSSEVP RTVRANISEI DVNSAPAAPE 360 THISRDSTNG AGTSVPAGGN DVFWQQFFTE TPGSDAQEVQ SERKEVGERR SEVTKVAWGN 420 FWWNRKSVDH LTEKIGHLTP AESA

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MEGGSNSPPP FLTKTYEMVD DSATDSVVSW SNSGDSFIVW NTTVFSRDLL PKYFKHNNFS  60
SFVRQLNTYG FRKADPEQWE FANEDFARGQ KHLLNNIHRR KPVHSHSLQA QGSASVSLSE  120
AERYELEGNI ERLKRDKDSL LLELNGHIEQ QYGLERQMLS LEEKMQVLLD RQRDIMEFLS  180
SVVQVPGFLS NIVQQPVFHC KKRRLLVHDC IQEDAGKNQI FEIQTTSTQK PETVSIQALD  240
LVPFEKMEST LNTLETFFRN VSLASSGEMY CDFGSVHSIP YAVLPTDSHI AVRENVVNSP  300
STSPKLHSSS PCVGDFHSSP ELADSTSFVE NSGVSSSEVP RTVRANISEI DVNSAPAAPE  360
THISRDSTNG AGTSVPAGGN DVFWQQFFTE TPGSDAQEVQ SERKEVGERR SEVTKVAWGN  420
FWWNRKSVDH LTEKIGHLTP AESA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	1e-80	HSF family protein