PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020671925.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 280aa    MW: 32396.5 Da    PI: 5.2383
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020671925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.52.6e-1946132390
            FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     Y++YA+++GFsvrk++++   ++++i++++fvCsk g+++ +++  +k + +r+ t+tgC a+++   ++dg w v+k  +  nHela
  XP_020671925.1  46 YCKYAHSTGFSVRKDHHHFWLNSRKIKSKDFVCSKAGFKKVTESG-TKIKYRRSCTKTGCLAMVRFYVSQDGIWGVNKAIETYNHELA 132
                     9****************************************9999.99999***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MEGSNLGFAL EDFVDFEETL TLNYDQAFFD LIQGVYNSEK EAYEKYCKYA HSTGFSVRKD  60
HHHFWLNSRK IKSKDFVCSK AGFKKVTESG TKIKYRRSCT KTGCLAMVRF YVSQDGIWGV  120
NKAIETYNHE LARPDDQYLL RSSRSISDDN AAILKSMSEA GIRIVDAFIY LSDEVGGVGN  180
LDFIKRDAYN YIQKERKAKI ETEDTNSLIK LFKEWVIDDN MFAWDVETDK DGYLLNFFWV  240
DGLGRIDYDY FGDVIIFDTS YCLNKYNLAC APIVGVNNHW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-39FAR1 family protein