PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019200482.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 813aa    MW: 88973.1 Da    PI: 6.3507
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019200482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-20112167156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t++q++eLe++F++n++p++++r eL ++l+L+ +qVk+WFqNrR+++k
  XP_019200482.1 112 RKKYHRHTPYQIQELESAFKENPHPDEKSRLELGRRLNLESKQVKFWFQNRRTQMK 167
                     7999*************************************************999 PP
2START170.11.5e-533215451206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                     ela +a++el+k+a+ +ep+W +s     e +n +e  ++f              + +ea rasg v+ +++ lve+l+d + +W+e+++    +
  XP_019200482.1 321 ELAFTAMNELLKLAEIGEPLWYRSLdgfgEALNLEEFDRTF----HsclgmrptnFITEATRASGTVIFNSMALVETLMDAN-RWSEMFTglvgR 410
                     57899********************5555444544444444....25677999999**************************.************ PP

                     EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
           START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                     a++++viss+      g+lqlm  elq lsplvp   + f+R+++q+ +g+w+ivdvSvd  ++ ++ +++  ++ lpSg+++++++ng+skv+w
  XP_019200482.1 411 ASIIDVISSNssgsrnGFLQLMHGELQILSPLVPiHHVKFLRFCKQHAEGVWAIVDVSVDMIREGTQPHEFPSCRILPSGCIVQDMPNGYSKVIW 505
                     ******************************************************************9999************************* PP

                     EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     + h++++++++h+ +r++++sg+ +ga++w+atlqrqce+
  XP_019200482.1 506 IQHMEYDDSTVHNFFRPMIRSGMGFGAQRWLATLQRQCEC 545
                     **************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    
MMTTFGGSIG SSGGGGGGGG RMVADSSPYS SMTTQPQLVA PPMVQPPRSM FSLALKPKME  60
GLGELGMIGE NFDPGSMGRA REDEYESRSG SENFEGASGD DQDTPGDKSS KRKKYHRHTP  120
YQIQELESAF KENPHPDEKS RLELGRRLNL ESKQVKFWFQ NRRTQMKTQL ERHENAILKQ  180
ENDKLRIENI AMKEAMSTPI CNQCGGQAIL GEVHVEEHHL RIENARLRDE LNRICVLANK  240
FLGKPFSSFP GAMAPPAMAN SGLELAVGRN SFGGMNPVDS SLPLGLDFGN GISSGLPLMS  300
SRANPNMTGV EASYDKSVFM ELAFTAMNEL LKLAEIGEPL WYRSLDGFGE ALNLEEFDRT  360
FHSCLGMRPT NFITEATRAS GTVIFNSMAL VETLMDANRW SEMFTGLVGR ASIIDVISSN  420
SSGSRNGFLQ LMHGELQILS PLVPIHHVKF LRFCKQHAEG VWAIVDVSVD MIREGTQPHE  480
FPSCRILPSG CIVQDMPNGY SKVIWIQHME YDDSTVHNFF RPMIRSGMGF GAQRWLATLQ  540
RQCECLAVIM SSSMPSTDNS VVSHAGRRSI ASLAQRMTRS FCAVVCGNIY KWEPIQTGNG  600
DDAARLNMRK SVGEPGEPPG VVLSATKTIW LPISRQHLFD FLRSEETRNQ WDVLSNGTLQ  660
QMIHISKGQD PANQISLYRN TASASVNQNS MLILQESCND ISGSLIAYAS VGAPEMTMVM  720
NGGDSSCVAL LPSGFSIVPD CFNSSGWPDD HPKGTLPKEG GPGNNSTGAL LTVGFQMLVS  780
SLPGAKLTLE SVETVNALIS RMVLDIKAAF HCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein