PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019200272.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 222aa MW: 25466.7 Da PI: 9.8205 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.7e-16 | 6 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l+ +++++G +W+ I++ g+ Rt+k+c++rw +yl XP_019200272.1 6 KGAWSPQEDRRLISYITKYGIWNWSQIPKFAGLARTGKSCRLRWKNYL 53 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 38.1 | 3.5e-12 | 59 | 104 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE e +v+ lG++ W++ a+ ++ gRt++++k++++++l XP_019200272.1 59 RGPFSVEEVEVIVRMYLSLGNR-WSAMAAQLP-GRTDNDIKNFYHTHL 104 89********************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MVNLKKGAWS PQEDRRLISY ITKYGIWNWS QIPKFAGLAR TGKSCRLRWK NYLRPDVKRG 60 PFSVEEVEVI VRMYLSLGNR WSAMAAQLPG RTDNDIKNFY HTHLKKNLQE AVSVPVSSRR 120 SAAENCRKRT NKSKNDDNAP PPVNVVVVAE KPHHHSHDDH VLLDSSPGGF GNPNVARDQE 180 FHHPFTSVSA AMDRMSLSSE EDYDEDKSFW YNVLKKADDL KF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 3e-46 | MYB family protein |