PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019200009.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 642aa MW: 73156.2 Da PI: 4.9965

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019200009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00062	614	631	3	20
ETTTTEEESSHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHi 20 C++Cg+ F ++ L++H+ XP_019200009.1 614 CEKCGEEFESRTKLHKHL 631 *****************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence
MASPDKRCLY EVLGVSRDCS PDEIRSAYKK LALQRHPDKL VQSGVPESEA TAAFQELVNA 60 YEVLSDPRER SWYDSNRSKI LFSSSTSGPN SSSKFGSVPN LFSFFSNSVY SGFSDTGKGF 120 YKVYADVFDK VYNNEVNFAK MLGLNPPKEA PVMGNSNSPY AQVTAFYNYW LGFTTVMDFC 180 WVDQYDAMAG INRKSRRVME DENKKLRKKA RREFNETVRG LAEFVKKRDK RVIDMQVKRN 240 EEMERKREED LARRKELERL KEERAKKYKE PDWTQVEDVE YEAEETLEED DREEEGNELY 300 CIACGKRFKS EKQWKNHEQS KKHKEKVAAL REAFSGEDKE FEEIDVNGRK EEEEEEQKTP 360 EADESGYFSA TDDAIDELGE QFEGSFGIQG KTGDGDDDDE EFETAGKAGY TSDGQDSKAA 420 AGESGSDDDE ASILEAMVSG HRSRKNAVSN RHSEIENDDN EMDFMEYNNL KSSGRKRGSR 480 KQRGRRAEEE MKLNKDEHSG QAGKNTGYDE NLDVQRSPKA KTDGDRIAEE EMKLNEDELG 540 QAEKNTGYVE NLDVQRSPKA KTDGKEDDSS EMIDKIPRQV NKRGNTKKDN NTKSKNGSKG 600 RKEKTASKVS SNACEKCGEE FESRTKLHKH LGETGHASLK KR

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence

MASPDKRCLY EVLGVSRDCS PDEIRSAYKK LALQRHPDKL VQSGVPESEA TAAFQELVNA  60
YEVLSDPRER SWYDSNRSKI LFSSSTSGPN SSSKFGSVPN LFSFFSNSVY SGFSDTGKGF  120
YKVYADVFDK VYNNEVNFAK MLGLNPPKEA PVMGNSNSPY AQVTAFYNYW LGFTTVMDFC  180
WVDQYDAMAG INRKSRRVME DENKKLRKKA RREFNETVRG LAEFVKKRDK RVIDMQVKRN  240
EEMERKREED LARRKELERL KEERAKKYKE PDWTQVEDVE YEAEETLEED DREEEGNELY  300
CIACGKRFKS EKQWKNHEQS KKHKEKVAAL REAFSGEDKE FEEIDVNGRK EEEEEEQKTP  360
EADESGYFSA TDDAIDELGE QFEGSFGIQG KTGDGDDDDE EFETAGKAGY TSDGQDSKAA  420
AGESGSDDDE ASILEAMVSG HRSRKNAVSN RHSEIENDDN EMDFMEYNNL KSSGRKRGSR  480
KQRGRRAEEE MKLNKDEHSG QAGKNTGYDE NLDVQRSPKA KTDGDRIAEE EMKLNEDELG  540
QAEKNTGYVE NLDVQRSPKA KTDGKEDDSS EMIDKIPRQV NKRGNTKKDN NTKSKNGSKG  600
RKEKTASKVS SNACEKCGEE FESRTKLHKH LGETGHASLK KR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	230	RKSRRVMEDENKKLRKKARREFNETVRGLAEFVKKRDK
2	204	212	KKLRKKARR
3	227	264	RKSRRVMEDENKKLRKKARREFNETVRGLAEFVKKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-135	C2H2 family protein