PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199844.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 265aa MW: 27928 Da PI: 10.244

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199844.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.4	1.2e-38	41	140	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+pai+++tgt++++as+ a++ s+s++ s + XP_019199844.1 41 APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKTDGETVQWLLQQAEPAIIAATGTGTIPASALaAAAEASVSEQGTSVSaslhefa 135 789******************************************************************88873333344433333333433333 PP TCP 89 ....k 89 + XP_019199844.1 136 girsH 140 33330 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MAGNKPAEIK DLQILSSQNT NTNNKDQPQP QENNNKKLQV APKRSSNKDR HKKVDGRGRR 60 IRMPALCAAR IFQLTRELGH KTDGETVQWL LQQAEPAIIA ATGTGTIPAS ALAAAAEASV 120 SEQGTSVSAS LHEFAGIRSH WAVMGGNNNL GRPQISSAAA AAAAAAAAAA WPSIPGFAPG 180 FSGNQILNSI PKFGFHGFEF PNPGTFTGLE LGLSQEGRIG SVNFQALPQS YQQQIGGQTT 240 GNNPMNHQPQ QHPGTGRDES QGPGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	4e-57	TCP family protein