PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199807.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 504aa    MW: 57547.3 Da    PI: 8.2679
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199807.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.72.8e-2742129186
        trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                     rW+++e+laL+++r++m+ ++r+ ++ k+plW+evs+km e g++r++k+Ckek++n+ k++k++keg+++  + ++ +++++f++le
  XP_019199807.1  42 RWPREETLALLNIRSQMDLAFRDsSSHKAPLWDEVSRKMGELGYHRNAKKCKEKFDNIYKYHKRTKEGRSGSgRRQNAKNYRFFQHLE 129
                     8*********************835799***************************************99877689999*******997 PP
2trihelix100.51.3e-31372456186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++ev aLi++r++++ +++++ +k+plWee+s+ m++ g+ers+k+Ckekwen+nk+y+++ke++kkr +e+s+tcpyf+ l+
  XP_019199807.1 372 RWPREEVEALIKVRTNLDLQYQDNGSKGPLWEEISAGMKKFGYERSAKRCKEKWENINKYYRRVKETQKKR-PEDSKTCPYFHLLD 456
                     8*********************************************************************8.99*********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    
MLETPVLLQN SSDDGGGGGA AELKKNNEGG GEDGEWNSGG NRWPREETLA LLNIRSQMDL  60
AFRDSSSHKA PLWDEVSRKM GELGYHRNAK KCKEKFDNIY KYHKRTKEGR SGSGRRQNAK  120
NYRFFQHLEL FDTHHSLTSH QIQIQNQNTL EKPTLVSPAT PLTMLKPTTS LTQDHLRIQQ  180
PCHTPGDFSL DINSTSTSAT SSSSEGIAKK KRKLGDYFDK LMKRVLEKQE GLHCKFLEAI  240
EKRDKDRMAR EEAWKRQEME RLKREQESIA QERGIAAAKD AAIIAFLQKI TQQPIPIPIP  300
VPLPMNPTPI SPKCVEKQES VLEKNIADGS RSEDVVEKGN DTQENVAERS SVEKRENGGC  360
GESNSVQTSS SRWPREEVEA LIKVRTNLDL QYQDNGSKGP LWEEISAGMK KFGYERSAKR  420
CKEKWENINK YYRRVKETQK KRPEDSKTCP YFHLLDSVYQ SKSRRVEHRT SEVPKSKGEM  480
LVQNQEEEDG ERPSVDQNEE NDDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214KKKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-107Trihelix family protein