PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199658.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 427aa MW: 44395.9 Da PI: 7.7737

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199658.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127	2e-39	103	188	3	87
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++ ++ +ss+ + s+ XP_019199658.1 103 VAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFStLNVPLRSSGTTISA 188 689*****************************************************************988644444444442222 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MDFMEPHSNK SNNHGGGGGG NGNGGGSSNN NTSDHHNHLH HRPTPPANQE PPPSSLQLVP 60 HLSQPDPAGA GSGKAPATQP PHDPFMGSIS TPNTNSGAST KVVAKKPSKD RHTKVDGRGR 120 RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPSII AATGTGTIPA NFSTLNVPLR 180 SSGTTISAPA TKSGPLFIHG GATAMLGFHH QLSSAGYGHD PDENYMKKRL REDTSGATSP 240 SAAKPDRTGV QGHEPGADSI PGSSQPSSFI PAPAMWAVAP AAGNVGNTFW MLPVSGGGGA 300 TTATVGVAAA AAAAAQQEQH QFLHYKGSAG MQRIGGFEFP GGGRFSPVQL GSMVLQQPQP 360 VQQLGLGVSE TNMGMLASIN AYSGGGNRVD LGMNLEQHQQ HHHQHHQHHQ NQPQTSESGD 420 ENPTASQ

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MDFMEPHSNK SNNHGGGGGG NGNGGGSSNN NTSDHHNHLH HRPTPPANQE PPPSSLQLVP  60
HLSQPDPAGA GSGKAPATQP PHDPFMGSIS TPNTNSGAST KVVAKKPSKD RHTKVDGRGR  120
RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPSII AATGTGTIPA NFSTLNVPLR  180
SSGTTISAPA TKSGPLFIHG GATAMLGFHH QLSSAGYGHD PDENYMKKRL REDTSGATSP  240
SAAKPDRTGV QGHEPGADSI PGSSQPSSFI PAPAMWAVAP AAGNVGNTFW MLPVSGGGGA  300
TTATVGVAAA AAAAAQQEQH QFLHYKGSAG MQRIGGFEFP GGGRFSPVQL GSMVLQQPQP  360
VQQLGLGVSE TNMGMLASIN AYSGGGNRVD LGMNLEQHQQ HHHQHHQHHQ NQPQTSESGD  420
ENPTASQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	4e-53	TCP family protein