PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199606.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 267aa    MW: 30302.8 Da    PI: 7.0858
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199606.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.2e-15855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv +v+++G ++W+  a+  g++Rt+k+c++rw +yl
   XP_019199606.1  8 KGPWTEQEDVQLVFYVNLFGDRRWDFLAKVSGLKRTGKSCRLRWVNYL 55
                     79********************************************97 PP
2Myb_DNA-binding51.81.9e-1661106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r ++T++E+ l+++ + ++G++ W++Iar+++ gRt++++k++w++++
   XP_019199606.1  61 RCKMTPQEERLILEFHSKWGNK-WSRIARKLP-GRTDNEIKNYWRTHM 106
                      6689******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MVHEEFRKGP WTEQEDVQLV FYVNLFGDRR WDFLAKVSGL KRTGKSCRLR WVNYLHPGLK  60
RCKMTPQEER LILEFHSKWG NKWSRIARKL PGRTDNEIKN YWRTHMRKKA QEKKKNNNNG  120
GACISASSSS LTNCCSYSSS ANSPPAVESV VDEANERDFY DTGGVDEELP PTHDNGAAAA  180
AKAYTMDEIW KDIEQLGDVY CGNQPRSVTS SSSPMWNYWA ETLLMTADYN HGGGGESKIV  240
PFPPPPPPTN DQFYSSFDNQ DSIFLTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-70MYB family protein