PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199323.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 707aa MW: 77969.5 Da PI: 7.7803

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.3	7.2e-24	111	212	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + + XP_019199323.1 111 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVVAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR--AD 201 89**************************997556555..8********************************************3..47 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_019199323.1 202 NGDLCVGIRRA 212 7888**996 PP
2	Auxin_resp	109	4.8e-36	278	361	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+t+++FevvY+Pra t+eF+v++++v++a+ +++ G Rfkm fetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+ XP_019199323.1 278 AAYLAATGQPFEVVYYPRANTPEFCVRASSVNAAMGLQWCSGLRFKMPFETEDSSRISWfMGTISSVQVADPIHWPNSPWRLLQ 361 677899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence
MESCEKNCLD SQLWHACAGG MVQMPPVNSK VFYFPQGHAE HTLGNVDFSM LPKIPPLILC 60 RVGAVKYLAD VETDEVYAKI RLVPVGNNEP EFEDAVLGSS ASETAEKPTS FAKTLTQSDA 120 NNGGGFSVPR YCAETIFPRL DYTADPPVQT VVAKDVHGET WKFRHIYRGT PRRHLLTTGW 180 STFVNQKKLV AGDSIVFLRA DNGDLCVGIR RAKRCGNIGL DAPSGWNTGA PGSYGGFSAY 240 LREDENRIKR TGINGNPNSS GGGFKERGKV KPKSVIEAAY LAATGQPFEV VYYPRANTPE 300 FCVRASSVNA AMGLQWCSGL RFKMPFETED SSRISWFMGT ISSVQVADPI HWPNSPWRLL 360 QVTWDEPDLL QNVKHVSPWL VELVSNMPMI HLSPFSPPRK KLCLPQDLLI DGQFRIPSFS 420 SNPLGASSHF CCLPDNISAG MQGARHAQFG GQLLDLHLRN KMQLGQLPPS FRQQIDSESK 480 VSDGMIKSQK EGNENTSCLL TIGNSAQRSE KTDTVMTPRF LLFGQPILTE QQMSHGCSID 540 AVSQTSTRKI SRSEMQLQPE RSHIDRKDLP GNLSSPTFFL NQACHVAELG QHTGHCKVIL 600 ESEDVAHTLD LSVLGSYEEL YKKLADMFGI ERSEMLRHII YCDATTGALR QIGYEPFSEF 660 KRNAKRLTIS KNAGSSAGRT WVTGFPIPTA ERGLNSSNQA GALSIFA

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence

MESCEKNCLD SQLWHACAGG MVQMPPVNSK VFYFPQGHAE HTLGNVDFSM LPKIPPLILC  60
RVGAVKYLAD VETDEVYAKI RLVPVGNNEP EFEDAVLGSS ASETAEKPTS FAKTLTQSDA  120
NNGGGFSVPR YCAETIFPRL DYTADPPVQT VVAKDVHGET WKFRHIYRGT PRRHLLTTGW  180
STFVNQKKLV AGDSIVFLRA DNGDLCVGIR RAKRCGNIGL DAPSGWNTGA PGSYGGFSAY  240
LREDENRIKR TGINGNPNSS GGGFKERGKV KPKSVIEAAY LAATGQPFEV VYYPRANTPE  300
FCVRASSVNA AMGLQWCSGL RFKMPFETED SSRISWFMGT ISSVQVADPI HWPNSPWRLL  360
QVTWDEPDLL QNVKHVSPWL VELVSNMPMI HLSPFSPPRK KLCLPQDLLI DGQFRIPSFS  420
SNPLGASSHF CCLPDNISAG MQGARHAQFG GQLLDLHLRN KMQLGQLPPS FRQQIDSESK  480
VSDGMIKSQK EGNENTSCLL TIGNSAQRSE KTDTVMTPRF LLFGQPILTE QQMSHGCSID  540
AVSQTSTRKI SRSEMQLQPE RSHIDRKDLP GNLSSPTFFL NQACHVAELG QHTGHCKVIL  600
ESEDVAHTLD LSVLGSYEEL YKKLADMFGI ERSEMLRHII YCDATTGALR QIGYEPFSEF  660
KRNAKRLTIS KNAGSSAGRT WVTGFPIPTA ERGLNSSNQA GALSIFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein