PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019199265.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 729aa MW: 81779.3 Da PI: 5.0071 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 359.1 | 6.4e-110 | 355 | 726 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+ v+++d + a++ L+++++++sp+gd++qRla +f+++L+arla+++++ly+al+p++ + e+l+a++++ ++P+ k++ XP_019199265.1 355 LRTLLISCAQSVAADDRRTANEQLKQIRQHSSPNGDANQRLANVFANGLEARLAGTGTRLYAALAPKRIT---AFEKLKAYQAYMSACPFKKIAM 446 6789***************************************************************999...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN++I++ g+ ++H+iDf+i +G+QWp L+q L+sRp+gpp+lR+Tg++ p++g +e++eetg+rL k++e++gvpfe+n+++++++e+ XP_019199265.1 447 MFANKMIYKISLGAPTLHVIDFGILYGFQWPILIQHLSSRPGGPPKLRVTGIDLPQPGfrPAEMIEETGRRLGKYCERFGVPFEYNAIATQNWET 541 *********************************************************9*9****************************999**** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L++ +gE++aVn+ ++ ++llde+v+++s+rd+vL+l+++++P ++v++ + +++++ F++rf eal ++salfd+++a++pr++++r XP_019199265.1 542 IKIEDLKLVSGEVVAVNCLYRFKNLLDETVAVDSPRDAVLSLIRKINPSIFVHAVINGSYSAPFFVTRFREALFHFSALFDMFDATIPRDDQHRF 636 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 E+e+ gre nv+aceg er+er et+++W+ r ++aGFk +pl+ + +++ + + + + +e+ +++++gWk+r + + S+W XP_019199265.1 637 HFEQEFYGRETLNVIACEGVERVERAETYKQWQVRTMRAGFKLLPLNPELMTKLSEKKGAGYHRDFLFDEDGKWMLQGWKGRLICASSCW 726 ****************************************************9998887777788************************* PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 729 aa Download sequence |
MDPRFTGLPD SVSSFKVEDE FFFSSFQQSQ DIIPNNYLDD SLPLDFMAVP LNPLITPSPE 60 TGYFPPPAEL DSPDDQDADP VLKYLNQILL EENIDEKPSM FHDPIALKAA EKSFYEALAK 120 GPPSPYHTES PDSLFGNSCE PSTSSSTIGS SNTDPLWIVE PGESKSSFAS YPPFHSSFET 180 TSERSNGSLD GFGGNMNVQM DSLSNANVLA NIFTDTDSIL QFKRGMEEAS KFLPASNQLV 240 IDLDQYSLPP KTEELPRDTL IKAENIERDS SHNSSRGRKH HHLEDDEFEE ERSSKQSAVY 300 VEEELSELFD KVLLCNPNEC ALTNRPPPSE VDKGVPNSGK SRSKKLGATN EAVDLRTLLI 360 SCAQSVAADD RRTANEQLKQ IRQHSSPNGD ANQRLANVFA NGLEARLAGT GTRLYAALAP 420 KRITAFEKLK AYQAYMSACP FKKIAMMFAN KMIYKISLGA PTLHVIDFGI LYGFQWPILI 480 QHLSSRPGGP PKLRVTGIDL PQPGFRPAEM IEETGRRLGK YCERFGVPFE YNAIATQNWE 540 TIKIEDLKLV SGEVVAVNCL YRFKNLLDET VAVDSPRDAV LSLIRKINPS IFVHAVINGS 600 YSAPFFVTRF REALFHFSAL FDMFDATIPR DDQHRFHFEQ EFYGRETLNV IACEGVERVE 660 RAETYKQWQV RTMRAGFKLL PLNPELMTKL SEKKGAGYHR DFLFDEDGKW MLQGWKGRLI 720 CASSCWVPA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | GRAS family protein |