PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199194.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 546aa MW: 58958.5 Da PI: 4.9382

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	9.2e-18	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l XP_019199194.1 35 KGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 82 79******************************************9986 PP
2	Myb_DNA-binding	52	1.6e-16	88	131	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ XP_019199194.1 88 KGAFTPEEESRIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 131 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MKTEIEDKMT SKGGISDDTT GGGNAGSVGG KTLKKGPWTS AEDAILVEYV TKHGEGNWNA 60 VQKHSGLARC GKSCRLRWAN HLRPDLKKGA FTPEEESRII ELHAKMGNKW ARMAAELPGR 120 TDNEIKNYWN TRIKRRQRAG LPIYPPDICL KALNESKQNE DFSTFPNGGT HHPDLLQINN 180 FEIPAVEFKS LEVNQQLYPP ALLDIPPSSL LDIPASSLLA HGLNSSYGNR SVLSTMHPSK 240 RIRGSEPLFP GLNANAGDIL PACSPYQNDS SVEIAESFVF SSAYDHSLAS SHPSFSGVIS 300 GSHASLNGNS SSLEPTWAKK LELPSLQSQM GSWGSPSSPL PSLESVDTLI QSPPTEHNTG 360 SGSLSPRNSG LLDAVLYESQ TLKHTKSNSS EQTSGAFMMP GDIMDSSCPD LDGTELEAYG 420 DPISPLGHSV ASVFSEYTPI SGSSLDEPQS VETMPGDEAK QEDAGSVSVQ CDDKNDASNH 480 EEMFSRPDFL LDSNCFDMKA DHGKNHSILK DAFGAVLFDD FSKDCKKITG LGCVQDSCAW 540 DAMSTF

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MKTEIEDKMT SKGGISDDTT GGGNAGSVGG KTLKKGPWTS AEDAILVEYV TKHGEGNWNA  60
VQKHSGLARC GKSCRLRWAN HLRPDLKKGA FTPEEESRII ELHAKMGNKW ARMAAELPGR  120
TDNEIKNYWN TRIKRRQRAG LPIYPPDICL KALNESKQNE DFSTFPNGGT HHPDLLQINN  180
FEIPAVEFKS LEVNQQLYPP ALLDIPPSSL LDIPASSLLA HGLNSSYGNR SVLSTMHPSK  240
RIRGSEPLFP GLNANAGDIL PACSPYQNDS SVEIAESFVF SSAYDHSLAS SHPSFSGVIS  300
GSHASLNGNS SSLEPTWAKK LELPSLQSQM GSWGSPSSPL PSLESVDTLI QSPPTEHNTG  360
SGSLSPRNSG LLDAVLYESQ TLKHTKSNSS EQTSGAFMMP GDIMDSSCPD LDGTELEAYG  420
DPISPLGHSV ASVFSEYTPI SGSSLDEPQS VETMPGDEAK QEDAGSVSVQ CDDKNDASNH  480
EEMFSRPDFL LDSNCFDMKA DHGKNHSILK DAFGAVLFDD FSKDCKKITG LGCVQDSCAW  540
DAMSTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-84	MYB family protein