PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199073.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SRS

Protein Properties

Length: 490aa MW: 49874.8 Da PI: 7.7591

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199073.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	199.3	1.2e-61	253	413	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssa 94 ++++CqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpaa+rrerqq + +s a +++ ++ sk++r +++++st+ ++a XP_019199073.1 253 TASTCQDCGNQAKKDCVHRRCRTCCKSRGLDCTTHVKSTWVPAARRRERQQGSHPSSPAAVTAScsqsVSSGSKKPRLV--LGNNSQTSTSNNTA 345 5679*******************************************998877665554444443356666667665..44444445555566 PP DUF702 95 eskkeletss.......lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 +++++++t + +P++v ++a frcvrvs vd +++e+aYq++v igGhvfkG+LydqGl++ XP_019199073.1 346 TTPRSFDTGDsgggggsMPKQVTAPAEFRCVRVSPVDGgEDDEFAYQAVVRIGGHVFKGFLYDQGLDN 413 77777877777899999****************967889********************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MEDVPCQILQ RGKERTKPSK GCSDSWFRSV GILTKSAVVA TGRRVVLPSS DSNFSDWAVA 60 SSSATHSSAA AAFGDLSLGF NAAPNSAVDG GAASAAAGHV GVWSSSSARQ MQQQINHGVP 120 PDMGMFVVAP AASFLHHHNQ NHPACISFDG SSPAATALGV GVGVNVIPLL ADDLVVNSSH 180 RGRGGGGLQL WQSQDAAAAA VAAAAGQNSS STSAAADISY TKKPGEHPHG SPSSNSQSFF 240 QLQGGGGGAG GATASTCQDC GNQAKKDCVH RRCRTCCKSR GLDCTTHVKS TWVPAARRRE 300 RQQGSHPSSP AAVTASCSQS VSSGSKKPRL VLGNNSQTST SNNTATTPRS FDTGDSGGGG 360 GSMPKQVTAP AEFRCVRVSP VDGGEDDEFA YQAVVRIGGH VFKGFLYDQG LDNDGDDHAG 420 NNPHHPGLFP NISDLNLGAR GASNNVILGS GHGTTSSPPP PPPILAASSS EPHDIFGMGG 480 GSNFGIGNPF

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MEDVPCQILQ RGKERTKPSK GCSDSWFRSV GILTKSAVVA TGRRVVLPSS DSNFSDWAVA  60
SSSATHSSAA AAFGDLSLGF NAAPNSAVDG GAASAAAGHV GVWSSSSARQ MQQQINHGVP  120
PDMGMFVVAP AASFLHHHNQ NHPACISFDG SSPAATALGV GVGVNVIPLL ADDLVVNSSH  180
RGRGGGGLQL WQSQDAAAAA VAAAAGQNSS STSAAADISY TKKPGEHPHG SPSSNSQSFF  240
QLQGGGGGAG GATASTCQDC GNQAKKDCVH RRCRTCCKSR GLDCTTHVKS TWVPAARRRE  300
RQQGSHPSSP AAVTASCSQS VSSGSKKPRL VLGNNSQTST SNNTATTPRS FDTGDSGGGG  360
GSMPKQVTAP AEFRCVRVSP VDGGEDDEFA YQAVVRIGGH VFKGFLYDQG LDNDGDDHAG  420
NNPHHPGLFP NISDLNLGAR GASNNVILGS GHGTTSSPPP PPPILAASSS EPHDIFGMGG  480
GSNFGIGNPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	1e-49	SRS family protein