PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199058.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 501aa MW: 55966.9 Da PI: 6.0703

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199058.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00032	63	86	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C C+k+Fs+ L H+++ H XP_019199058.1 63 HVCVECNKRFSSGKALGGHMSSaH 86 79******************9988 PP
2	zf-C2H2	12.9	0.00032	356	378	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+ksFs++ L H ++H XP_019199058.1 356 FKCSTCNKSFSSHQALGGHRSSH 378 89**************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
METHQRNPKK RDRDEEEDNG FPRKEDFPPP PPAAAAAGDR NLKVKLRIDK NPRAGESPEK 60 KDHVCVECNK RFSSGKALGG HMSSAHVQAN RDYSYRKKKQ VVRGGTSGKG SDEDGGGTEE 120 EESEEGRREY YRDKDGQIRC PHCCKKFPSR KSLFGHMRCH PDRYWRGMEP PPLHHQTLTI 180 SDHQTLAISD HHNTYKSSSS EEEEDEKDEK EISPEGVIDL QGYLSTWAST AKRGRSPINR 240 RISSTSSGDD SDEELQEAVH HLVCLGNAQN PNPEINPGFM GKGKERLSDN EDDDSEELTK 300 WINPKNIDCP NENASVPAPS NNNNNKKRRI LLMESEAESP KEASSDDYSD QNIKLFKCST 360 CNKSFSSHQA LGGHRSSHNK FKLSVQNTID DWTNASASSA PLQNPQSYPQ TVANPHENNN 420 NDASNASSKY QCSVCNKVFA TGKALGGHKK CHSTPQLIQP ALPNSPERSS TPRNNTIDDE 480 DEDDDEPKHL DFDLNEIPND G

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

METHQRNPKK RDRDEEEDNG FPRKEDFPPP PPAAAAAGDR NLKVKLRIDK NPRAGESPEK  60
KDHVCVECNK RFSSGKALGG HMSSAHVQAN RDYSYRKKKQ VVRGGTSGKG SDEDGGGTEE  120
EESEEGRREY YRDKDGQIRC PHCCKKFPSR KSLFGHMRCH PDRYWRGMEP PPLHHQTLTI  180
SDHQTLAISD HHNTYKSSSS EEEEDEKDEK EISPEGVIDL QGYLSTWAST AKRGRSPINR  240
RISSTSSGDD SDEELQEAVH HLVCLGNAQN PNPEINPGFM GKGKERLSDN EDDDSEELTK  300
WINPKNIDCP NENASVPAPS NNNNNKKRRI LLMESEAESP KEASSDDYSD QNIKLFKCST  360
CNKSFSSHQA LGGHRSSHNK FKLSVQNTID DWTNASASSA PLQNPQSYPQ TVANPHENNN  420
NDASNASSKY QCSVCNKVFA TGKALGGHKK CHSTPQLIQP ALPNSPERSS TPRNNTIDDE  480
DEDDDEPKHL DFDLNEIPND G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	4e-17	C2H2 family protein