PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019198996.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 664aa    MW: 75643.2 Da    PI: 6.4703
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019198996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.48.3e-1092896602374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL +cA+a +++d+++ ++ La +++++s+ gd+ +Rla++f++A +ar a+++++ly++++ ++ s    +e l+a++++  ++P+ ++s++
  XP_019198996.1 289 TDLLARCAQAEAAHDKKNFDHRLAAIRQHSSQFGDAAERLAHCFANAVEARAAGTGTSLYASITRRRMS---AAEYLKAYQTYITACPFKRMSNI 380
                     689*********************************************************999888887...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN+ I + + ++e++HiiDf+i +G+QWp++++ ++ Rp+gpp+lRiTg++ p++g   +e++eetg+rL++fA++++vpf++++ +ak++e++
  XP_019198996.1 381 YANKSIAKLTRESEKIHIIDFGILYGFQWPCIIHGISLRPGGPPQLRITGIDFPQPGfrPAERIEETGRRLENFARRFNVPFQYTA-IAKKWEEI 474
                     ********************************************************9*****************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++e+L+++++E l+ n+ +++++++de++  ++ +rd+vLkl+k+++P+ +v+   +  +n++ F +rf ea  ++salfd++ea++pre+e r 
  XP_019198996.1 475 TPEDLNIQEDEILVANCLYRMKNVPDETLMENNsPRDDVLKLIKKINPQFFVHGIVNGMYNAPFFTTRFREAYFHFSALFDMFEATMPREDEGRL 569
                     ****************************987777************************************************************* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       E+ellgr++ nv+aceg+er+er et+++W++r ++aGF+++pl  ++ k++k   r+ + + ++vee+ +++++ Wk+r ++++S W+
  XP_019198996.1 570 LAEQELLGRDVLNVIACEGRERVERPETYKQWQMRTQRAGFRALPLHREIIKEVKEKTRMGYHRDFSVEEDGEWMLQSWKGRVIYAMSLWQ 660
                     **************************************************************999*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    
MGTLFRAHHN SRDEPEFNHH CSVPSSGSLN EGCSDVLGFS GMKSVHDSQA PSEGETMVEG  60
DYFDGVFKYI QQMLMEEDDL EYIPYMFQDC MALQAAEKSF YDALTENPPP PPPPHSGNRN  120
VQFSIPDNQP FPAQFPLPGN QTFQTGLQEL QPGYNPFPEQ VQIPMIPMNN SSGSMFGNQF  180
SGEPIGNGCS GGSNGRRNRN REDGGEGRQR SKQMAAGNSD QEPEKTEKYD KALLCPSMNP  240
LFYDDSIPYL SDESSETEAR DKKYLQGPKR GRPRGSKKGA KPKQIVDLTD LLARCAQAEA  300
AHDKKNFDHR LAAIRQHSSQ FGDAAERLAH CFANAVEARA AGTGTSLYAS ITRRRMSAAE  360
YLKAYQTYIT ACPFKRMSNI YANKSIAKLT RESEKIHIID FGILYGFQWP CIIHGISLRP  420
GGPPQLRITG IDFPQPGFRP AERIEETGRR LENFARRFNV PFQYTAIAKK WEEITPEDLN  480
IQEDEILVAN CLYRMKNVPD ETLMENNSPR DDVLKLIKKI NPQFFVHGIV NGMYNAPFFT  540
TRFREAYFHF SALFDMFEAT MPREDEGRLL AEQELLGRDV LNVIACEGRE RVERPETYKQ  600
WQMRTQRAGF RALPLHREII KEVKEKTRMG YHRDFSVEED GEWMLQSWKG RVIYAMSLWQ  660
PLHN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-163GRAS family protein