PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198849.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 473aa MW: 52055.1 Da PI: 8.6866

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198849.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.7	5.2e-17	168	217	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_019198849.1 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 217 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MHAHTRKQRD MLLEDLNVDA VFYMDSACDE SDPDPCGRVT ASLNGGDDSG TSNTASSSSV 60 VNADDPPSSP STLAFSILKT SQVIEVEDGR NEAASVVASR QLLPVTREPF FSSAWPPPPQ 120 QQQQHQNWLK LSAPETGRGA EVGTFEPPYP QPCQPIKKSR RGPRSRSSQY RGVTFYRRTG 180 RWESHIWDCG KQVYLGGFDT AHSAARAYDR AAIKFRGVDA DINFHLSDYE EDMKQMKNLN 240 KEEFVQILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQL AGKKAYDKAA IKCYGREAMT 300 NFEPSAYEGE MNKNTRDGGT ICPMDVGTNA SLDLNLWISP PLDGPKRPEN ARKLQFNFEA 360 RDLSLLKRVK VECTPGTPYG PAMASQYSRW PGLQSALTPN NEEGLMGTNA EASSPVFSNL 420 RWLSQGVAPS APRFSSAASS GFSSTATSMF KFPSAAPPPS AASQNHLMTL RPN

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MHAHTRKQRD MLLEDLNVDA VFYMDSACDE SDPDPCGRVT ASLNGGDDSG TSNTASSSSV  60
VNADDPPSSP STLAFSILKT SQVIEVEDGR NEAASVVASR QLLPVTREPF FSSAWPPPPQ  120
QQQQHQNWLK LSAPETGRGA EVGTFEPPYP QPCQPIKKSR RGPRSRSSQY RGVTFYRRTG  180
RWESHIWDCG KQVYLGGFDT AHSAARAYDR AAIKFRGVDA DINFHLSDYE EDMKQMKNLN  240
KEEFVQILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQL AGKKAYDKAA IKCYGREAMT  300
NFEPSAYEGE MNKNTRDGGT ICPMDVGTNA SLDLNLWISP PLDGPKRPEN ARKLQFNFEA  360
RDLSLLKRVK VECTPGTPYG PAMASQYSRW PGLQSALTPN NEEGLMGTNA EASSPVFSNL  420
RWLSQGVAPS APRFSSAASS GFSSTATSMF KFPSAAPPPS AASQNHLMTL RPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.2	8e-85	AP2 family protein