PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019198846.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 488aa MW: 53816.1 Da PI: 8.5204 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.4e-17 | 168 | 217 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_019198846.1 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 217 78*******************......55************************997 PP | |||||||
2 | AP2 | 36.7 | 1e-11 | 260 | 310 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + g +k+ +lg + ++ eAa+a+++a+ k +g XP_019198846.1 260 SKYRGVTLHK-CGRWEAR---MGQlAG-KKYMYLGLYNSEVEAARAYDKAAIKCYG 310 89********.7******...533333.7**********99**********99776 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 488 aa Download sequence |
MHAHTRKQRD MLLEDLNVDA VFYMDSACDE SDPDPCGRVT ASLNGGDDSG TSNTASSSSV 60 VNADDPPSSP STLAFSILKT SQVIEVEDGR NEAASVVASR QLLPVTREPF FSSAWPPPPQ 120 QQQQHQNWLK LSAPETGRGA EVGTFEPPYP QPCQPIKKSR RGPRSRSSQY RGVTFYRRTG 180 RWESHIWDCG KQVYLGGFDT AHSAARAYDR AAIKFRGVDA DINFHLSDYE EDMKQMKNLN 240 KEEFVQILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQL AGKKYMYLGL YNSEVEAARA 300 YDKAAIKCYG REAMTNFEPS AYEGEMNKNT RDGGTICPMD VGTNASLDLN LWISPPLDGP 360 KRPENARKLQ FNFEARDLSL LKRVKVECTP GTPYGPAMAS QYSRWPGLQS ALTPNNEEGL 420 MGTNAEASSP VFSNLRWLSQ GVAPSAPRFS SAASSGFSST ATSMFKFPSA APPPSAASQN 480 HLMTLRPN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28550.3 | 8e-93 | AP2 family protein |