PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198777.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 373aa MW: 41915.9 Da PI: 4.8586

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.3	2.7e-15	138	222	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e+ +L++a ++ + +r++l+ W+ev+kk+ +e +++r+ +qC+++++ l+k+ykk+k+ + t ++ +++yf++++ XP_019198777.1 138 WSEHETFVLLDAWGDRFLKQGRKSLRSEEWQEVAKKVsQESKIKRTDTQCRNRLDTLKKKYKKEKTKLAE-TRSVTGRWVYFRKMD 222 ***********************************88999***********************9.5777889****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MDDTEDDARY PPNTCRAGDD YGSSDNQKRP AWSAPDPRHV GDQYGEDDDE DSDDEAEFDD 60 NIGNGVQVQQ IGKDESSDTD DEDDFDTDSG DTQRNQKKRK LKSLLSSYEF VPRAPAAAAA 120 GVAAPKASVG GRNPLADWSE HETFVLLDAW GDRFLKQGRK SLRSEEWQEV AKKVSQESKI 180 KRTDTQCRNR LDTLKKKYKK EKTKLAETRS VTGRWVYFRK MDLLLSSSNQ QQGGLSCGLD 240 SGEYVLTNPK SHLSRANELD EMRDSPGISV SADAEDNSEG LPPKRTKKGK RGADGGSSFK 300 LLADSIHKFS EIYEKIEDSK RQQMLELEKM RMDFHRELEA QKRQILERAK AEIAKIRQGD 360 YEENNGSAEN ASG

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MDDTEDDARY PPNTCRAGDD YGSSDNQKRP AWSAPDPRHV GDQYGEDDDE DSDDEAEFDD  60
NIGNGVQVQQ IGKDESSDTD DEDDFDTDSG DTQRNQKKRK LKSLLSSYEF VPRAPAAAAA  120
GVAAPKASVG GRNPLADWSE HETFVLLDAW GDRFLKQGRK SLRSEEWQEV AKKVSQESKI  180
KRTDTQCRNR LDTLKKKYKK EKTKLAETRS VTGRWVYFRK MDLLLSSSNQ QQGGLSCGLD  240
SGEYVLTNPK SHLSRANELD EMRDSPGISV SADAEDNSEG LPPKRTKKGK RGADGGSSFK  300
LLADSIHKFS EIYEKIEDSK RQQMLELEKM RMDFHRELEA QKRQILERAK AEIAKIRQGD  360
YEENNGSAEN ASG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	7e-56	Trihelix family protein