PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019198775.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 837aa    MW: 92143.8 Da    PI: 6.6264
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019198775.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.1e-191674357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+++Le+l++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  XP_019198775.1 16 KYVRYTPEQVDALERLYHECPKPSSMRRQQLIRECpilsNIESRQIKVWFQNRRCREKQ 74
                    5679*****************************************************97 PP
2START166.51.9e-521613673204
                     HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                     a e+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ve+l d++  W ++++ +++l+vi ++  g+++l +
  XP_019198775.1 161 AKETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPTRVVEILKDRP-SWFRDCRTVDILNVIPTAngGTIELLY 254
                     67899****************************************************9998888888.****************9999******* PP

                     EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHH CS
           START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvk 186
                     ++l+a+++l+p Rdf+ +Ry   l +g++v++++S+ + q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l++
  XP_019198775.1 255 MQLYAPTTLAPaRDFWLLRYASVLDDGSLVVCERSLGNIQNGPSvppVPNFVRAEMLPSGYLIRPCDGGGSIIHIVDHMNLEAWSVPEVLRPLYE 349
                     *****************************************9999999*********************************************** PP

                     HHHHHHHHHHHHHTXXXX CS
           START 187 sglaegaktwvatlqrqc 204
                     s+++ + kt++a+l +++
  XP_019198775.1 350 SSAMLAHKTTMAALCHLR 367
                     ************997765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    
MSISCKDGKS VLDNGKYVRY TPEQVDALER LYHECPKPSS MRRQQLIREC PILSNIESRQ  60
IKVWFQNRRC REKQRKEASR FQSVNRKLTA MNKLLMEENA RLQKQVSQLV YENGHFRRQT  120
PSTGIGTKDT SCESVVTSGQ LQLTPQHPPR DASPEGLLCI AKETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIIAISHG CTGVAARACG LVGLEPTRVV EILKDRPSWF RDCRTVDILN  240
VIPTANGGTI ELLYMQLYAP TTLAPARDFW LLRYASVLDD GSLVVCERSL GNIQNGPSVP  300
PVPNFVRAEM LPSGYLIRPC DGGGSIIHIV DHMNLEAWSV PEVLRPLYES SAMLAHKTTM  360
AALCHLRQIA QEVSQPNLTN SGRWPAALRA LRQRLSRGFN EAVNGFTDEG WSLLGNDGID  420
DVTVLVNSSP YKLMGLDLTF GNGFTSISNA VLCAKASMLL QNVPPAMLLR FLREHRSEWA  480
ENNIDAYSAA AIKVGPCILP EARIFNFGNQ VILPLAHAVE HEELLEVIKF EGNGHSPDDA  540
IMPRDMFLLQ LCSGMDENAV GTCAELVFAP IDASFADDAP LLPSGFRIIP LDAGKEASSP  600
SRTLDLTSAL ETGTAENKAP NSLGTNNSAT RSVMTIAFQF AYESHMQEAV VSMARQYVRS  660
VISSVQRVAL ALSPSHLGSH PGLRLPLGTP EAHTLAQWIC QSYRCYLGVE LLKYSGEGSE  720
SILKALWSHS DAVVCCSAKA SPFLAFANQA GLDMLETTLA ALQDISLEKI FDDHGRKTLC  780
SEFPRIMQQG FSCLKGGICM SSMSRPISYE KAVAWKVLNE EENVHCICFM FMNWSFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein