PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019198749.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 270aa    MW: 30480 Da    PI: 5.5932
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019198749.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.93e-2264148290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Yn+YA+++GFsvrk +++++  +++i +++f+Csk g+++++  k      ++  trtgC+a ++    +dg w vtk e+ HnHel+
  XP_019198749.1  64 LYNNYAYRLGFSVRKGHQRYKVSTNTIQMKNFCCSKTGYKANSGVK----AYSKIDTRTGCEAFVQFDVGDDGLWIVTKHEKVHNHELC 148
                     7********************99999***************99877....8999*********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MEDGTEQTNS AVGARHSIQV SEGIVDGSVS SDQADVDIDG SSSILVDQYL VGLVVSNVDE  60
PFELYNNYAY RLGFSVRKGH QRYKVSTNTI QMKNFCCSKT GYKANSGVKA YSKIDTRTGC  120
EAFVQFDVGD DGLWIVTKHE KVHNHELCVF NKSHLLRSHR SVGDNQLLYL QGLKDSGVAL  180
ADGIRFLKHQ SGGSPLVGFT NRDAYNSMAA DTVKRLDGTY FNSLIEIFWR RQSTEFDFFF  240
DFELDLDARL CSFFFRDGQM RRDYEVLEIC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-17FAR1 family protein