PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198635.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 402aa MW: 45559.7 Da PI: 4.7078

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198635.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.4	1.5e-35	14	105	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+ye+++d+++++++sws n++sf+v+++ ef++++Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+ weF+++ F +g+ +l+++ XP_019198635.1 14 FLAKTYEMVDDPSTNSVVSWSLNNKSFIVWNPPEFSRDLLPRYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEGFVRGQPHLMKN 99 9******************999************************************9998.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_019198635.1 100 IHRRKP 105 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MDEASCNNNA LPPFLAKTYE MVDDPSTNSV VSWSLNNKSF IVWNPPEFSR DLLPRYFKHN 60 NFSSFIRQLN TYGFRKVDPE QWEFANEGFV RGQPHLMKNI HRRKPVHSHS TQNLHSSPLN 120 ESERQGYKDD IAKLKGDKES LLLELQRHKQ EHQGLELQMQ RLTECVQNVE QGQRNMLSSL 180 ARTLDKPELA LSLMPQMGLP DRKRRLPGNN YLYTETGTED NQTSTSQISM PENMVSTSLV 240 TFNKELLDQL ESSLIFWENM LQDVGQTVVH ESPAIELDES TSCADSPAIS YTQLNDEVEP 300 KTSGIDMNIE PSANPVLEVA PPEETGVASN VPTGVNDLFW EQFLTENPGS TDAPTDVLSE 360 RKNLDGRKSE SKPVDQGKFW WSVKSVNNLA EQLGHLTPAE RT

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MDEASCNNNA LPPFLAKTYE MVDDPSTNSV VSWSLNNKSF IVWNPPEFSR DLLPRYFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANEGFV RGQPHLMKNI HRRKPVHSHS TQNLHSSPLN  120
ESERQGYKDD IAKLKGDKES LLLELQRHKQ EHQGLELQMQ RLTECVQNVE QGQRNMLSSL  180
ARTLDKPELA LSLMPQMGLP DRKRRLPGNN YLYTETGTED NQTSTSQISM PENMVSTSLV  240
TFNKELLDQL ESSLIFWENM LQDVGQTVVH ESPAIELDES TSCADSPAIS YTQLNDEVEP  300
KTSGIDMNIE PSANPVLEVA PPEETGVASN VPTGVNDLFW EQFLTENPGS TDAPTDVLSE  360
RKNLDGRKSE SKPVDQGKFW WSVKSVNNLA EQLGHLTPAE RT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	206	DRKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	1e-107	HSF family protein