PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198282.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 1581aa MW: 178977 Da PI: 8.4803

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.1	1.7e-19	1360	1460	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 +fY++YA +vGF++r s+ + r+g+ ++++ vC++eg++++ ++ ++ +r+r+++rtgC+a+++ + +++t++ XP_019198282.1 1360 EFYKHYAAKVGFDTRSSSVVTA-RDGTKIQKHIVCNREGFKNTGAQHcpsqssadagegPSRPKRRRVSNRTGCRARIMFRYIGAVGYQITTF 1451 6************9998887.888899**********99999*****99899999************************ PP FAR1 82 eleHnHela 90 ++HnH+++ XP_019198282.1 1452 IEKHNHNMS 1460 ****986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1581 aa Download sequence
MRKLTSTTTI GSKRKHPSNN EANENSNIID AAYMSPIESS RNAGNSKPLI GVFQSSLSTP 60 LSMVTNGYYF DIGDPDYVCE HCNSFFWYNE RSSNSRGSEN PKYSACCVNG KIKFPLMTKP 120 PQKLHDLFFT TSDKNKCFLK NIRSYNNMFC FTSMGGKIDR TINNGTSPPI FRINGQNFHR 180 IGSLVPSIGI QPKFAQLYIH DTENEIENRF NSLRAQNNGS TLHVEVVHDI KQTLDEHNVL 240 VKSFRMAKSF IESNPQTHIR TRLIGKRTKD ARIYALPTTS EVAALIVGDI DPYMGQRDII 300 VESRSGVLKR ISELNPTYLP LQYPILFPYG EDGFREDIHF APHRTKQDFS RKSVSQREYF 360 AFRIHERSNE TSTIMYAKRL FQQFLVDAYT MVEFSRLLYI RLNKKALRCE AYKGLSDALT 420 RGEVQPSSQG KRIILPSSFT GGARYMIQNY QDAMAICRFI GYPNLFITFT CNPKWPEIER 480 FLEKRNLKAE DRSDIVCRVF KMKLDCLIKE IKNGKLFGRV KAVIYTIEFQ KRGLPHAHIL 540 LFLQANNEFA DPTFMDTIIS AEIPDKVTEN EYYKHVGEFM LHGPCGAARI KSPCMANGKC 600 SKHFPKRYID ASHFDQDGYQ LSIKYLFKYV NKGNDRVTVE FYKATIDGVG NEIVDEINMY 660 YDCRYVSAFV FQDDDTIDNV LNRETVGKSM FNAWFVANQN FKEASLLTYI EMPTKFVWKK 720 DIREWHPRKK GSSIGRIFYV PPASGEIYYL RCLLNIVRGP TSYKDIRTGN GVEYLTVRDA 780 CYAHGLLDDD KEYIDAINEA SYWSNAHSLR KLFVVLLTSS SIIRPENVWN QVWEHLSEDA 840 QHYQRRVLKQ QDLFLTEEEK KNFALIELEN LLGQQNKSLK DYPPMPTPST DNSRLFQNRL 900 VFEELSYDSE QLKTDSEVLC AKLTEEQGLI YDTVIQDIEN KKGDLFFVYG YGGTGKTFLW 960 RALSAAVRCK GQIVLNVASS GITSLLLPGG RTAHSRFAIP IAINEDSTCN IKQCSDLAEL 1020 LIKTSLIIWD EAPMMHKHCF EALDRTMRDL LRFVDPNSEM KTFGGKIVVL GGDFRQILPV 1080 VPKGTRQDIV SSAINSSYLW DSCKVLRLTK NLRLSSVPNG GNRQALQEFA DWIANIGDGK 1140 LGGRNNGFAD VEIPMHMLVS SGGDDIKAIV HSTFPIFASG NTDPEHLLGR AILAPTLDVV 1200 NAVNDYMTEL HNAESRSYYS SDAVSKADGD NGIFGDVHTP EFLNSIRVSG LPNHTLTLKI 1260 GSPVMLMRNI DHSLGLCNGT RLIITKLADQ VIEGEILTGP NKVPIDIQST NNPSLSPSSS 1320 SNGHTLTISP GMTQYWTPHC EDEIKPAVDM IFKTLDAGIE FYKHYAAKVG FDTRSSSVVT 1380 ARDGTKIQKH IVCNREGFKN TGAQHCPSQS SADAGEGPSR PKRRRVSNRT GCRARIMFRY 1440 IGAVGYQITT FIEKHNHNMS SVLARQFLKG NRNISSVHQK FILDCAKANI GASKSHGLYS 1500 NIVGDYSEVG ATVVDFKNVR RDLRAYILGA DAQILVHNLI KKQEMCPAFA FDYEVDEDEQ 1560 TVLGRSNVKK EFCCIWRCRL F

Sequence ? help Back to Top

Protein Sequence Length: 1581 aa Download sequence

MRKLTSTTTI GSKRKHPSNN EANENSNIID AAYMSPIESS RNAGNSKPLI GVFQSSLSTP  60
LSMVTNGYYF DIGDPDYVCE HCNSFFWYNE RSSNSRGSEN PKYSACCVNG KIKFPLMTKP  120
PQKLHDLFFT TSDKNKCFLK NIRSYNNMFC FTSMGGKIDR TINNGTSPPI FRINGQNFHR  180
IGSLVPSIGI QPKFAQLYIH DTENEIENRF NSLRAQNNGS TLHVEVVHDI KQTLDEHNVL  240
VKSFRMAKSF IESNPQTHIR TRLIGKRTKD ARIYALPTTS EVAALIVGDI DPYMGQRDII  300
VESRSGVLKR ISELNPTYLP LQYPILFPYG EDGFREDIHF APHRTKQDFS RKSVSQREYF  360
AFRIHERSNE TSTIMYAKRL FQQFLVDAYT MVEFSRLLYI RLNKKALRCE AYKGLSDALT  420
RGEVQPSSQG KRIILPSSFT GGARYMIQNY QDAMAICRFI GYPNLFITFT CNPKWPEIER  480
FLEKRNLKAE DRSDIVCRVF KMKLDCLIKE IKNGKLFGRV KAVIYTIEFQ KRGLPHAHIL  540
LFLQANNEFA DPTFMDTIIS AEIPDKVTEN EYYKHVGEFM LHGPCGAARI KSPCMANGKC  600
SKHFPKRYID ASHFDQDGYQ LSIKYLFKYV NKGNDRVTVE FYKATIDGVG NEIVDEINMY  660
YDCRYVSAFV FQDDDTIDNV LNRETVGKSM FNAWFVANQN FKEASLLTYI EMPTKFVWKK  720
DIREWHPRKK GSSIGRIFYV PPASGEIYYL RCLLNIVRGP TSYKDIRTGN GVEYLTVRDA  780
CYAHGLLDDD KEYIDAINEA SYWSNAHSLR KLFVVLLTSS SIIRPENVWN QVWEHLSEDA  840
QHYQRRVLKQ QDLFLTEEEK KNFALIELEN LLGQQNKSLK DYPPMPTPST DNSRLFQNRL  900
VFEELSYDSE QLKTDSEVLC AKLTEEQGLI YDTVIQDIEN KKGDLFFVYG YGGTGKTFLW  960
RALSAAVRCK GQIVLNVASS GITSLLLPGG RTAHSRFAIP IAINEDSTCN IKQCSDLAEL  1020
LIKTSLIIWD EAPMMHKHCF EALDRTMRDL LRFVDPNSEM KTFGGKIVVL GGDFRQILPV  1080
VPKGTRQDIV SSAINSSYLW DSCKVLRLTK NLRLSSVPNG GNRQALQEFA DWIANIGDGK  1140
LGGRNNGFAD VEIPMHMLVS SGGDDIKAIV HSTFPIFASG NTDPEHLLGR AILAPTLDVV  1200
NAVNDYMTEL HNAESRSYYS SDAVSKADGD NGIFGDVHTP EFLNSIRVSG LPNHTLTLKI  1260
GSPVMLMRNI DHSLGLCNGT RLIITKLADQ VIEGEILTGP NKVPIDIQST NNPSLSPSSS  1320
SNGHTLTISP GMTQYWTPHC EDEIKPAVDM IFKTLDAGIE FYKHYAAKVG FDTRSSSVVT  1380
ARDGTKIQKH IVCNREGFKN TGAQHCPSQS SADAGEGPSR PKRRRVSNRT GCRARIMFRY  1440
IGAVGYQITT FIEKHNHNMS SVLARQFLKG NRNISSVHQK FILDCAKANI GASKSHGLYS  1500
NIVGDYSEVG ATVVDFKNVR RDLRAYILGA DAQILVHNLI KKQEMCPAFA FDYEVDEDEQ  1560
TVLGRSNVKK EFCCIWRCRL F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1422	1426	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-15	FAR1 family protein